|
Status |
Public on May 18, 2017 |
Title |
saliva derived genomic DNA [SA048] |
Sample type |
genomic |
|
|
Source name |
Oragene saliva
|
Organism |
Homo sapiens |
Characteristics |
gender: female age: 46 batch: 1 european ancestry: 0.06263 bantu ancestry: 0.062883
|
Extracted molecule |
genomic DNA |
Extraction protocol |
genomic DNA was extracted from saliva sampled using Oragene kits by DNA Genotek using PrepIT reagent and a standard protocol
|
Label |
Cy5 and Cy3
|
Label protocol |
standard Illumina protocol
|
|
|
Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium HumanMethylation450 BeadChip using standard Illumina protocol
|
Scan protocol |
chips were scanned using an Illumina iScan and recommended settings
|
Description |
saliva sample
|
Data processing |
Illumina GenomeStudio 2011.1 software
|
|
|
Submission date |
May 17, 2017 |
Last update date |
May 18, 2017 |
Contact name |
Shyamalika Gopalan |
E-mail(s) |
shyamalika.gopalan@stonybrook.edu
|
Organization name |
Stony Brook University
|
Street address |
100 Nicolls Road
|
City |
Stony Brook |
ZIP/Postal code |
11794 |
Country |
USA |
|
|
Platform ID |
GPL13534 |
Series (2) |
GSE99029 |
Genome-wide DNA methylation of ǂKhomani San |
GSE99091 |
Genome-wide DNA methylation and SNP genotyping of ǂKhomani San |
|