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Sample GSM2630627 Query DataSets for GSM2630627
Status Public on May 18, 2017
Title saliva derived genomic DNA [SA048]
Sample type genomic
 
Source name Oragene saliva
Organism Homo sapiens
Characteristics gender: female
age: 46
batch: 1
european ancestry: 0.06263
bantu ancestry: 0.062883
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted from saliva sampled using Oragene kits by DNA Genotek using PrepIT reagent and a standard protocol
Label Cy5 and Cy3
Label protocol standard Illumina protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium HumanMethylation450 BeadChip using standard Illumina protocol
Scan protocol chips were scanned using an Illumina iScan and recommended settings
Description saliva sample
Data processing Illumina GenomeStudio 2011.1 software
 
Submission date May 17, 2017
Last update date May 18, 2017
Contact name Shyamalika Gopalan
E-mail(s) shyamalika.gopalan@stonybrook.edu
Organization name Stony Brook University
Street address 100 Nicolls Road
City Stony Brook
ZIP/Postal code 11794
Country USA
 
Platform ID GPL13534
Series (2)
GSE99029 Genome-wide DNA methylation of ǂKhomani San
GSE99091 Genome-wide DNA methylation and SNP genotyping of ǂKhomani San

Data table header descriptions
ID_REF
VALUE average beta
Detection_Pval

Data table
ID_REF VALUE Detection_Pval
cg00000029 0.2942478 0
cg00000108 0.9214301 0
cg00000109 0.8715073 0
cg00000165 0.265681 0
cg00000236 0.7671467 0
cg00000289 0.6159866 0
cg00000292 0.7773812 0
cg00000321 0.4283662 0
cg00000363 0.3522262 0
cg00000622 0.02902188 0
cg00000658 0.8143515 0
cg00000714 0.1732456 0
cg00000721 0.8826556 0
cg00000734 0.08568758 0
cg00000769 0.08429487 0
cg00000807 0.8681405 0
cg00000884 0.8057425 0
cg00000905 0.1041058 0
cg00000924 0.5425948 0
cg00000948 0.8774644 0

Total number of rows: 485577

Table truncated, full table size 10971 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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