|
Status |
Public on Mar 31, 2008 |
Title |
Primary lung fibroblasts, RNA expression, technical replicate A |
Sample type |
RNA |
|
|
Source name |
Primary lung fibroblasts
|
Organism |
Homo sapiens |
Characteristics |
Total RNA
|
Extracted molecule |
total RNA |
Extraction protocol |
Total RNA was prepared from 107-2x107 cells using RNAeasy Kit (QIAGEN) following the manufacturer’s instructions. RNA quality was ensured sing the Agilent Systems Bioanalyzer.
|
Label |
Biotin
|
Label protocol |
Biotinylated RNA was prepared with the Illumina TotalPrep RNA Amplification kit (Ambion)
|
|
|
Hybridization protocol |
34ul of the Hyb mix with labeled cRNA sample was dispensed onto the center of each array and allowed to hyb with rotations in a pre-heated oven for 16-20h at 55*C. Washes were done with Wash E1BC solution, Block E1 solution was used for blocking and detection performed by Block E1 solution+Streptavidin-Cy3/5.
|
Scan protocol |
Standard Illumina procedure
|
Description |
no additional description
|
Data processing |
Rank invariant normalization method implemented in Bead Studio software
|
|
|
Submission date |
Feb 11, 2008 |
Last update date |
Mar 12, 2008 |
Contact name |
Vitalina Komashko |
E-mail(s) |
vitalina.komashko@sagebase.org
|
Organization name |
Sage Bionetworks
|
Street address |
1100 Fairview Ave N
|
City |
Seattle |
State/province |
WA |
ZIP/Postal code |
98109 |
Country |
USA |
|
|
Platform ID |
GPL6255 |
Series (1) |
GSE10504 |
Using ChIP-chip technology to reveal common principles of transcriptional repression in normal and cancer cells |
|