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Sample GSM265540 Query DataSets for GSM265540
Status Public on Mar 09, 2009
Title SJL/J 135558_SOM01KY8
Sample type genomic
 
Channel 1
Source name SJL/J
Organism Mus musculus
Characteristics sex: male
tissue: kidney
Extracted molecule genomic DNA
Extraction protocol Phenol chloroform. DNA pooled from 2-6 animals.
Label Cy3 532
Label protocol see PMID 16075461
 
Channel 2
Source name C57BL/6J
Organism Mus musculus
Characteristics sex: male
tissue: kidney
Extracted molecule genomic DNA
Extraction protocol Phenol chloroform
Label Cy5 635
Label protocol see PMID 16075461
 
 
Hybridization protocol see PMID 16075461
Scan protocol see PMID 16075461
Description SJL/J 135558_SOM01KY8
Data processing normalization: qspline
 
Submission date Feb 13, 2008
Last update date Mar 03, 2009
Contact name Patrick Cahan
E-mail(s) patrick.cahan@jhmi.edu
Organization name Johns Hopkins University School of Medicine
Department ICE and Biomedical Engineering
Lab Cahan Lab
Street address 733 North Broadway, MRB 653
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL6436
Series (1)
GSE10656 The impact of copy number variation on local gene expression in mouse hematopoietic stem and progenitor cells

Data table header descriptions
ID_REF probe_id
cy3_532 normalized test signal intensity (log2)
cy5_635 normalized reference signal intensity (log2)
cy3_532r raw test signal intensity (log2)
cy5_635r raw reference signal intensity (log2)
VALUE normalized log2-ratio test/reference

Data table
ID_REF cy3_532 cy5_635 cy3_532r cy5_635r VALUE
CHR01FS003000493 11.44400 11.36500 11.64200 11.06600 0.07900
CHR01FS003001483 13.20900 13.17600 13.23800 13.15900 0.03300
CHR01FS003002372 11.50000 11.47300 11.68900 11.20400 0.02700
CHR01FS003003467 11.62600 11.76500 11.79700 11.56500 -0.13900
CHR01FS003004467 12.62400 12.66300 12.69000 12.59900 -0.03900
CHR01FS003017692 12.60500 12.61100 12.67300 12.54100 -0.00500
CHR01FS003018614 11.87700 11.81100 12.01600 11.62100 0.06600
CHR01FS003019781 13.49400 13.42500 13.50700 13.42900 0.06900
CHR01FS003020661 12.23400 12.34900 12.33400 12.24700 -0.11500
CHR01FS003022724 12.55700 12.71600 12.62800 12.65800 -0.15900
CHR01FS003023789 12.31200 12.18000 12.40400 12.05400 0.13200
CHR01FS003025855 11.23200 11.35300 11.46300 11.04900 -0.12000
CHR01FS003026905 11.25000 11.31400 11.47800 10.99900 -0.06400
CHR01FS003027760 11.82600 11.95500 11.97100 11.79200 -0.13000
CHR01FS003034893 12.93700 12.64900 12.98100 12.58400 0.28700
CHR01FS003035973 11.93800 11.75500 12.07000 11.55400 0.18300
CHR01FS003036888 11.03600 10.97200 11.30300 10.52900 0.06500
CHR01FS003037908 12.62200 12.69900 12.68800 12.63900 -0.07700
CHR01FS003039052 10.75700 10.58500 11.08500 9.93400 0.17200
CHR01FS003040093 10.95100 10.91400 11.23600 10.44400 0.03800

Total number of rows: 2149887

Table truncated, full table size 128845 Kbytes.




Supplementary file Size Download File type/resource
GSM265540_135558_SOM01KY8_532.pair.gz 36.5 Mb (ftp)(http) PAIR
GSM265540_135558_SOM01KY8_635.pair.gz 36.5 Mb (ftp)(http) PAIR
Processed data included within Sample table

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