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GEO accession:
Sample GSM265540
Query DataSets for GSM265540
Status
Public on Mar 09, 2009
Title
SJL/J 135558_SOM01KY8
Sample type
genomic
Channel 1
Source name
SJL/J
Organism
Mus musculus
Characteristics
sex: male
tissue: kidney
Extracted molecule
genomic DNA
Extraction protocol
Phenol chloroform. DNA pooled from 2-6 animals.
Label
Cy3 532
Label protocol
see PMID 16075461
Channel 2
Source name
C57BL/6J
Organism
Mus musculus
Characteristics
sex: male
tissue: kidney
Extracted molecule
genomic DNA
Extraction protocol
Phenol chloroform
Label
Cy5 635
Label protocol
see PMID 16075461
Hybridization protocol
see PMID 16075461
Scan protocol
see PMID 16075461
Description
SJL/J 135558_SOM01KY8
Data processing
normalization: qspline
Submission date
Feb 13, 2008
Last update date
Mar 03, 2009
Contact name
Patrick Cahan
E-mail(s)
patrick.cahan@jhmi.edu
Organization name
Johns Hopkins University School of Medicine
Department
ICE and Biomedical Engineering
Lab
Cahan Lab
Street address
733 North Broadway, MRB 653
City
Baltimore
State/province
MD
ZIP/Postal code
21205
Country
USA
Platform ID
GPL6436
Series (1)
GSE10656
The impact of copy number variation on local gene expression in mouse hematopoietic stem and progenitor cells
Data table header descriptions
ID_REF
probe_id
cy3_532
normalized test signal intensity (log2)
cy5_635
normalized reference signal intensity (log2)
cy3_532r
raw test signal intensity (log2)
cy5_635r
raw reference signal intensity (log2)
VALUE
normalized log2-ratio test/reference
Data table
ID_REF
cy3_532
cy5_635
cy3_532r
cy5_635r
VALUE
CHR01FS003000493
11.44400
11.36500
11.64200
11.06600
0.07900
CHR01FS003001483
13.20900
13.17600
13.23800
13.15900
0.03300
CHR01FS003002372
11.50000
11.47300
11.68900
11.20400
0.02700
CHR01FS003003467
11.62600
11.76500
11.79700
11.56500
-0.13900
CHR01FS003004467
12.62400
12.66300
12.69000
12.59900
-0.03900
CHR01FS003017692
12.60500
12.61100
12.67300
12.54100
-0.00500
CHR01FS003018614
11.87700
11.81100
12.01600
11.62100
0.06600
CHR01FS003019781
13.49400
13.42500
13.50700
13.42900
0.06900
CHR01FS003020661
12.23400
12.34900
12.33400
12.24700
-0.11500
CHR01FS003022724
12.55700
12.71600
12.62800
12.65800
-0.15900
CHR01FS003023789
12.31200
12.18000
12.40400
12.05400
0.13200
CHR01FS003025855
11.23200
11.35300
11.46300
11.04900
-0.12000
CHR01FS003026905
11.25000
11.31400
11.47800
10.99900
-0.06400
CHR01FS003027760
11.82600
11.95500
11.97100
11.79200
-0.13000
CHR01FS003034893
12.93700
12.64900
12.98100
12.58400
0.28700
CHR01FS003035973
11.93800
11.75500
12.07000
11.55400
0.18300
CHR01FS003036888
11.03600
10.97200
11.30300
10.52900
0.06500
CHR01FS003037908
12.62200
12.69900
12.68800
12.63900
-0.07700
CHR01FS003039052
10.75700
10.58500
11.08500
9.93400
0.17200
CHR01FS003040093
10.95100
10.91400
11.23600
10.44400
0.03800
Total number of rows:
2149887
Table truncated, full table size
128845 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM265540_135558_SOM01KY8_532.pair.gz
36.5 Mb
(ftp)
(http)
PAIR
GSM265540_135558_SOM01KY8_635.pair.gz
36.5 Mb
(ftp)
(http)
PAIR
Processed data included within Sample table
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