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Sample GSM265554 Query DataSets for GSM265554
Status Public on Mar 09, 2009
Title NOD/LtJ 135560_SOM01GF4
Sample type genomic
 
Channel 1
Source name NOD/LtJ
Organism Mus musculus
Characteristics sex: male
tissue: kidney
Extracted molecule genomic DNA
Extraction protocol Phenol chloroform. DNA pooled from 2-6 animals.
Label Cy3 532
Label protocol see PMID 16075461
 
Channel 2
Source name C57BL/6J
Organism Mus musculus
Characteristics sex: male
tissue: kidney
Extracted molecule genomic DNA
Extraction protocol Phenol chloroform
Label Cy5 635
Label protocol see PMID 16075461
 
 
Hybridization protocol see PMID 16075461
Scan protocol see PMID 16075461
Description NOD/LtJ 135560_SOM01GF4
Data processing normalization: qspline
 
Submission date Feb 13, 2008
Last update date Mar 03, 2009
Contact name Patrick Cahan
E-mail(s) patrick.cahan@jhmi.edu
Organization name Johns Hopkins University School of Medicine
Department ICE and Biomedical Engineering
Lab Cahan Lab
Street address 733 North Broadway, MRB 653
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL6436
Series (1)
GSE10656 The impact of copy number variation on local gene expression in mouse hematopoietic stem and progenitor cells

Data table header descriptions
ID_REF probe_id
cy3_532 normalized test signal intensity (log2)
cy5_635 normalized reference signal intensity (log2)
cy3_532r raw test signal intensity (log2)
cy5_635r raw reference signal intensity (log2)
VALUE normalized log2-ratio test/reference

Data table
ID_REF cy3_532 cy5_635 cy3_532r cy5_635r VALUE
CHR01FS003000493 12.94600 12.99400 12.99000 12.93000 -0.04800
CHR01FS003001483 14.15300 14.06000 14.17300 14.04500 0.09400
CHR01FS003002372 12.59800 12.54300 12.65800 12.44200 0.05400
CHR01FS003003467 12.52500 12.82900 12.59000 12.75400 -0.30400
CHR01FS003004467 13.44500 13.56600 13.47500 13.53300 -0.12100
CHR01FS003017692 14.26800 13.97800 14.28600 13.96100 0.29000
CHR01FS003018614 12.96100 12.85300 13.00500 12.78000 0.10800
CHR01FS003019781 14.51400 14.72200 14.52900 14.73600 -0.20800
CHR01FS003020661 13.68800 13.43200 13.71300 13.39300 0.25500
CHR01FS003022724 14.29500 14.17900 14.31200 14.17000 0.11500
CHR01FS003023789 13.57900 13.30300 13.60600 13.25700 0.27600
CHR01FS003025855 12.25200 12.30800 12.33700 12.18000 -0.05700
CHR01FS003026905 12.61800 12.80300 12.67700 12.72500 -0.18500
CHR01FS003027760 13.31000 13.12000 13.34200 13.06400 0.19000
CHR01FS003034893 13.97800 14.00400 14.00000 13.98900 -0.02600
CHR01FS003035973 12.95100 12.99000 12.99500 12.92600 -0.03900
CHR01FS003036888 11.86900 11.98600 11.99600 11.80500 -0.11700
CHR01FS003037908 13.72200 13.71500 13.74700 13.68800 0.00700
CHR01FS003039052 12.12400 12.19600 12.22200 12.05100 -0.07200
CHR01FS003040093 12.39200 11.94700 12.46600 11.76000 0.44500

Total number of rows: 2149887

Table truncated, full table size 128904 Kbytes.




Supplementary file Size Download File type/resource
GSM265554_135560_SOM01GF4_532.pair.gz 36.8 Mb (ftp)(http) PAIR
GSM265554_135560_SOM01GF4_635.pair.gz 36.8 Mb (ftp)(http) PAIR
Processed data included within Sample table

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