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GEO accession:
Sample GSM265554
Query DataSets for GSM265554
Status
Public on Mar 09, 2009
Title
NOD/LtJ 135560_SOM01GF4
Sample type
genomic
Channel 1
Source name
NOD/LtJ
Organism
Mus musculus
Characteristics
sex: male
tissue: kidney
Extracted molecule
genomic DNA
Extraction protocol
Phenol chloroform. DNA pooled from 2-6 animals.
Label
Cy3 532
Label protocol
see PMID 16075461
Channel 2
Source name
C57BL/6J
Organism
Mus musculus
Characteristics
sex: male
tissue: kidney
Extracted molecule
genomic DNA
Extraction protocol
Phenol chloroform
Label
Cy5 635
Label protocol
see PMID 16075461
Hybridization protocol
see PMID 16075461
Scan protocol
see PMID 16075461
Description
NOD/LtJ 135560_SOM01GF4
Data processing
normalization: qspline
Submission date
Feb 13, 2008
Last update date
Mar 03, 2009
Contact name
Patrick Cahan
E-mail(s)
patrick.cahan@jhmi.edu
Organization name
Johns Hopkins University School of Medicine
Department
ICE and Biomedical Engineering
Lab
Cahan Lab
Street address
733 North Broadway, MRB 653
City
Baltimore
State/province
MD
ZIP/Postal code
21205
Country
USA
Platform ID
GPL6436
Series (1)
GSE10656
The impact of copy number variation on local gene expression in mouse hematopoietic stem and progenitor cells
Data table header descriptions
ID_REF
probe_id
cy3_532
normalized test signal intensity (log2)
cy5_635
normalized reference signal intensity (log2)
cy3_532r
raw test signal intensity (log2)
cy5_635r
raw reference signal intensity (log2)
VALUE
normalized log2-ratio test/reference
Data table
ID_REF
cy3_532
cy5_635
cy3_532r
cy5_635r
VALUE
CHR01FS003000493
12.94600
12.99400
12.99000
12.93000
-0.04800
CHR01FS003001483
14.15300
14.06000
14.17300
14.04500
0.09400
CHR01FS003002372
12.59800
12.54300
12.65800
12.44200
0.05400
CHR01FS003003467
12.52500
12.82900
12.59000
12.75400
-0.30400
CHR01FS003004467
13.44500
13.56600
13.47500
13.53300
-0.12100
CHR01FS003017692
14.26800
13.97800
14.28600
13.96100
0.29000
CHR01FS003018614
12.96100
12.85300
13.00500
12.78000
0.10800
CHR01FS003019781
14.51400
14.72200
14.52900
14.73600
-0.20800
CHR01FS003020661
13.68800
13.43200
13.71300
13.39300
0.25500
CHR01FS003022724
14.29500
14.17900
14.31200
14.17000
0.11500
CHR01FS003023789
13.57900
13.30300
13.60600
13.25700
0.27600
CHR01FS003025855
12.25200
12.30800
12.33700
12.18000
-0.05700
CHR01FS003026905
12.61800
12.80300
12.67700
12.72500
-0.18500
CHR01FS003027760
13.31000
13.12000
13.34200
13.06400
0.19000
CHR01FS003034893
13.97800
14.00400
14.00000
13.98900
-0.02600
CHR01FS003035973
12.95100
12.99000
12.99500
12.92600
-0.03900
CHR01FS003036888
11.86900
11.98600
11.99600
11.80500
-0.11700
CHR01FS003037908
13.72200
13.71500
13.74700
13.68800
0.00700
CHR01FS003039052
12.12400
12.19600
12.22200
12.05100
-0.07200
CHR01FS003040093
12.39200
11.94700
12.46600
11.76000
0.44500
Total number of rows:
2149887
Table truncated, full table size
128904 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM265554_135560_SOM01GF4_532.pair.gz
36.8 Mb
(ftp)
(http)
PAIR
GSM265554_135560_SOM01GF4_635.pair.gz
36.8 Mb
(ftp)
(http)
PAIR
Processed data included within Sample table
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