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GEO accession:
Sample GSM265556
Query DataSets for GSM265556
Status
Public on Mar 09, 2009
Title
SWR/J 136273_SOM01GFN
Sample type
genomic
Channel 1
Source name
SWR/J
Organism
Mus musculus
Characteristics
sex: male
tissue: kidney
Extracted molecule
genomic DNA
Extraction protocol
Phenol chloroform. DNA pooled from 2-6 animals.
Label
Cy3 532
Label protocol
see PMID 16075461
Channel 2
Source name
C57BL/6J
Organism
Mus musculus
Characteristics
sex: male
tissue: kidney
Extracted molecule
genomic DNA
Extraction protocol
Phenol chloroform
Label
Cy5 635
Label protocol
see PMID 16075461
Hybridization protocol
see PMID 16075461
Scan protocol
see PMID 16075461
Description
SWR/J 136273_SOM01GFN
Data processing
normalization: qspline
Submission date
Feb 13, 2008
Last update date
Mar 03, 2009
Contact name
Patrick Cahan
E-mail(s)
patrick.cahan@jhmi.edu
Organization name
Johns Hopkins University School of Medicine
Department
ICE and Biomedical Engineering
Lab
Cahan Lab
Street address
733 North Broadway, MRB 653
City
Baltimore
State/province
MD
ZIP/Postal code
21205
Country
USA
Platform ID
GPL6436
Series (1)
GSE10656
The impact of copy number variation on local gene expression in mouse hematopoietic stem and progenitor cells
Data table header descriptions
ID_REF
probe_id
cy3_532
normalized test signal intensity (log2)
cy5_635
normalized reference signal intensity (log2)
cy3_532r
raw test signal intensity (log2)
cy5_635r
raw reference signal intensity (log2)
VALUE
normalized log2-ratio test/reference
Data table
ID_REF
cy3_532
cy5_635
cy3_532r
cy5_635r
VALUE
CHR01FS003000493
12.32100
12.51000
12.37500
12.42500
-0.18900
CHR01FS003001483
13.96300
13.88600
14.01500
13.83800
0.07700
CHR01FS003002372
12.98100
12.97700
13.04000
12.89900
0.00500
CHR01FS003003467
12.68200
12.63300
12.73900
12.54900
0.04900
CHR01FS003004467
12.69900
12.97500
12.75600
12.89700
-0.27600
CHR01FS003017692
13.65300
13.72800
13.71000
13.67200
-0.07400
CHR01FS003018614
12.93300
12.79600
12.99200
12.71400
0.13700
CHR01FS003019781
14.42200
14.54700
14.46200
14.54000
-0.12400
CHR01FS003020661
13.62900
13.36100
13.68600
13.29300
0.26800
CHR01FS003022724
14.31800
14.04900
14.36200
14.00800
0.26900
CHR01FS003023789
12.99500
12.74000
13.05300
12.65800
0.25500
CHR01FS003025855
11.98800
11.87000
12.03900
11.77400
0.11800
CHR01FS003026905
12.83800
13.24100
12.89600
13.16900
-0.40300
CHR01FS003027760
12.98000
12.59200
13.03900
12.50700
0.38900
CHR01FS003034893
14.02400
13.70000
14.07600
13.64400
0.32400
CHR01FS003035973
12.43800
12.53000
12.49400
12.44500
-0.09200
CHR01FS003036888
11.49100
11.70800
11.53900
11.60700
-0.21700
CHR01FS003037908
13.30100
13.22700
13.35900
13.15500
0.07400
CHR01FS003039052
12.46300
12.91900
12.51900
12.84000
-0.45500
CHR01FS003040093
12.47100
11.81700
12.52700
11.71900
0.65500
Total number of rows:
2149887
Table truncated, full table size
128917 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM265556_136273_SOM01GFN_532.pair.gz
36.7 Mb
(ftp)
(http)
PAIR
GSM265556_136273_SOM01GFN_635.pair.gz
36.7 Mb
(ftp)
(http)
PAIR
Processed data included within Sample table
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