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Sample GSM265556 Query DataSets for GSM265556
Status Public on Mar 09, 2009
Title SWR/J 136273_SOM01GFN
Sample type genomic
 
Channel 1
Source name SWR/J
Organism Mus musculus
Characteristics sex: male
tissue: kidney
Extracted molecule genomic DNA
Extraction protocol Phenol chloroform. DNA pooled from 2-6 animals.
Label Cy3 532
Label protocol see PMID 16075461
 
Channel 2
Source name C57BL/6J
Organism Mus musculus
Characteristics sex: male
tissue: kidney
Extracted molecule genomic DNA
Extraction protocol Phenol chloroform
Label Cy5 635
Label protocol see PMID 16075461
 
 
Hybridization protocol see PMID 16075461
Scan protocol see PMID 16075461
Description SWR/J 136273_SOM01GFN
Data processing normalization: qspline
 
Submission date Feb 13, 2008
Last update date Mar 03, 2009
Contact name Patrick Cahan
E-mail(s) patrick.cahan@jhmi.edu
Organization name Johns Hopkins University School of Medicine
Department ICE and Biomedical Engineering
Lab Cahan Lab
Street address 733 North Broadway, MRB 653
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL6436
Series (1)
GSE10656 The impact of copy number variation on local gene expression in mouse hematopoietic stem and progenitor cells

Data table header descriptions
ID_REF probe_id
cy3_532 normalized test signal intensity (log2)
cy5_635 normalized reference signal intensity (log2)
cy3_532r raw test signal intensity (log2)
cy5_635r raw reference signal intensity (log2)
VALUE normalized log2-ratio test/reference

Data table
ID_REF cy3_532 cy5_635 cy3_532r cy5_635r VALUE
CHR01FS003000493 12.32100 12.51000 12.37500 12.42500 -0.18900
CHR01FS003001483 13.96300 13.88600 14.01500 13.83800 0.07700
CHR01FS003002372 12.98100 12.97700 13.04000 12.89900 0.00500
CHR01FS003003467 12.68200 12.63300 12.73900 12.54900 0.04900
CHR01FS003004467 12.69900 12.97500 12.75600 12.89700 -0.27600
CHR01FS003017692 13.65300 13.72800 13.71000 13.67200 -0.07400
CHR01FS003018614 12.93300 12.79600 12.99200 12.71400 0.13700
CHR01FS003019781 14.42200 14.54700 14.46200 14.54000 -0.12400
CHR01FS003020661 13.62900 13.36100 13.68600 13.29300 0.26800
CHR01FS003022724 14.31800 14.04900 14.36200 14.00800 0.26900
CHR01FS003023789 12.99500 12.74000 13.05300 12.65800 0.25500
CHR01FS003025855 11.98800 11.87000 12.03900 11.77400 0.11800
CHR01FS003026905 12.83800 13.24100 12.89600 13.16900 -0.40300
CHR01FS003027760 12.98000 12.59200 13.03900 12.50700 0.38900
CHR01FS003034893 14.02400 13.70000 14.07600 13.64400 0.32400
CHR01FS003035973 12.43800 12.53000 12.49400 12.44500 -0.09200
CHR01FS003036888 11.49100 11.70800 11.53900 11.60700 -0.21700
CHR01FS003037908 13.30100 13.22700 13.35900 13.15500 0.07400
CHR01FS003039052 12.46300 12.91900 12.51900 12.84000 -0.45500
CHR01FS003040093 12.47100 11.81700 12.52700 11.71900 0.65500

Total number of rows: 2149887

Table truncated, full table size 128917 Kbytes.




Supplementary file Size Download File type/resource
GSM265556_136273_SOM01GFN_532.pair.gz 36.7 Mb (ftp)(http) PAIR
GSM265556_136273_SOM01GFN_635.pair.gz 36.7 Mb (ftp)(http) PAIR
Processed data included within Sample table

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