GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM265710
Query DataSets for GSM265710
Status
Public on Mar 09, 2009
Title
SM/J 136277_SOM01KYE
Sample type
genomic
Channel 1
Source name
SM/J
Organism
Mus musculus
Characteristics
sex: male
tissue: kidney
Extracted molecule
genomic DNA
Extraction protocol
Phenol chloroform. DNA pooled from 2-6 animals.
Label
Cy3 532
Label protocol
see PMID 16075461
Channel 2
Source name
C57BL/6J
Organism
Mus musculus
Characteristics
sex: male
tissue: kidney
Extracted molecule
genomic DNA
Extraction protocol
Phenol chloroform
Label
Cy5 635
Label protocol
see PMID 16075461
Hybridization protocol
see PMID 16075461
Scan protocol
see PMID 16075461
Description
SM/J 136277_SOM01KYE
Data processing
normalization: qspline
Submission date
Feb 13, 2008
Last update date
Mar 03, 2009
Contact name
Patrick Cahan
E-mail(s)
patrick.cahan@jhmi.edu
Organization name
Johns Hopkins University School of Medicine
Department
ICE and Biomedical Engineering
Lab
Cahan Lab
Street address
733 North Broadway, MRB 653
City
Baltimore
State/province
MD
ZIP/Postal code
21205
Country
USA
Platform ID
GPL6436
Series (1)
GSE10656
The impact of copy number variation on local gene expression in mouse hematopoietic stem and progenitor cells
Data table header descriptions
ID_REF
probe_id
cy3_532
normalized test signal intensity (log2)
cy5_635
normalized reference signal intensity (log2)
cy3_532r
raw test signal intensity (log2)
cy5_635r
raw reference signal intensity (log2)
VALUE
normalized log2-ratio test/reference
Data table
ID_REF
cy3_532
cy5_635
cy3_532r
cy5_635r
VALUE
CHR01FS003000493
11.36300
11.36400
11.22500
11.46100
-0.00100
CHR01FS003001483
13.18300
12.92700
13.11200
13.01300
0.25600
CHR01FS003002372
11.19600
10.98700
11.05500
11.07400
0.20900
CHR01FS003003467
11.62800
11.64500
11.49800
11.74500
-0.01700
CHR01FS003004467
12.15100
12.28000
12.03900
12.37700
-0.12900
CHR01FS003017692
12.94900
12.52900
12.86900
12.62200
0.42000
CHR01FS003018614
11.42300
11.38400
11.28700
11.48100
0.03900
CHR01FS003019781
13.13900
13.38500
13.06700
13.46400
-0.24600
CHR01FS003020661
11.90200
12.07000
11.78000
12.16800
-0.16700
CHR01FS003022724
12.32100
12.16800
12.21400
12.26600
0.15200
CHR01FS003023789
12.35100
11.91200
12.24600
12.01300
0.43900
CHR01FS003025855
11.14500
11.24400
11.00400
11.33900
-0.09800
CHR01FS003026905
11.38200
10.98000
11.24500
11.06700
0.40200
CHR01FS003027760
11.73800
11.66600
11.61100
11.76500
0.07300
CHR01FS003034893
12.58000
12.54100
12.48300
12.63400
0.03800
CHR01FS003035973
11.41600
11.46300
11.28000
11.56100
-0.04700
CHR01FS003036888
10.58700
10.84000
10.43900
10.92200
-0.25300
CHR01FS003037908
12.55800
12.39400
12.46100
12.48800
0.16400
CHR01FS003039052
10.85600
11.17700
10.71000
11.27000
-0.32100
CHR01FS003040093
11.06600
10.67100
10.92300
10.74400
0.39600
Total number of rows:
2149887
Table truncated, full table size
128742 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM265710_136277_SOM01KYE_532.pair.gz
36.4 Mb
(ftp)
(http)
PAIR
GSM265710_136277_SOM01KYE_635.pair.gz
36.5 Mb
(ftp)
(http)
PAIR
Processed data included within Sample table
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|