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Sample GSM265710 Query DataSets for GSM265710
Status Public on Mar 09, 2009
Title SM/J 136277_SOM01KYE
Sample type genomic
 
Channel 1
Source name SM/J
Organism Mus musculus
Characteristics sex: male
tissue: kidney
Extracted molecule genomic DNA
Extraction protocol Phenol chloroform. DNA pooled from 2-6 animals.
Label Cy3 532
Label protocol see PMID 16075461
 
Channel 2
Source name C57BL/6J
Organism Mus musculus
Characteristics sex: male
tissue: kidney
Extracted molecule genomic DNA
Extraction protocol Phenol chloroform
Label Cy5 635
Label protocol see PMID 16075461
 
 
Hybridization protocol see PMID 16075461
Scan protocol see PMID 16075461
Description SM/J 136277_SOM01KYE
Data processing normalization: qspline
 
Submission date Feb 13, 2008
Last update date Mar 03, 2009
Contact name Patrick Cahan
E-mail(s) patrick.cahan@jhmi.edu
Organization name Johns Hopkins University School of Medicine
Department ICE and Biomedical Engineering
Lab Cahan Lab
Street address 733 North Broadway, MRB 653
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL6436
Series (1)
GSE10656 The impact of copy number variation on local gene expression in mouse hematopoietic stem and progenitor cells

Data table header descriptions
ID_REF probe_id
cy3_532 normalized test signal intensity (log2)
cy5_635 normalized reference signal intensity (log2)
cy3_532r raw test signal intensity (log2)
cy5_635r raw reference signal intensity (log2)
VALUE normalized log2-ratio test/reference

Data table
ID_REF cy3_532 cy5_635 cy3_532r cy5_635r VALUE
CHR01FS003000493 11.36300 11.36400 11.22500 11.46100 -0.00100
CHR01FS003001483 13.18300 12.92700 13.11200 13.01300 0.25600
CHR01FS003002372 11.19600 10.98700 11.05500 11.07400 0.20900
CHR01FS003003467 11.62800 11.64500 11.49800 11.74500 -0.01700
CHR01FS003004467 12.15100 12.28000 12.03900 12.37700 -0.12900
CHR01FS003017692 12.94900 12.52900 12.86900 12.62200 0.42000
CHR01FS003018614 11.42300 11.38400 11.28700 11.48100 0.03900
CHR01FS003019781 13.13900 13.38500 13.06700 13.46400 -0.24600
CHR01FS003020661 11.90200 12.07000 11.78000 12.16800 -0.16700
CHR01FS003022724 12.32100 12.16800 12.21400 12.26600 0.15200
CHR01FS003023789 12.35100 11.91200 12.24600 12.01300 0.43900
CHR01FS003025855 11.14500 11.24400 11.00400 11.33900 -0.09800
CHR01FS003026905 11.38200 10.98000 11.24500 11.06700 0.40200
CHR01FS003027760 11.73800 11.66600 11.61100 11.76500 0.07300
CHR01FS003034893 12.58000 12.54100 12.48300 12.63400 0.03800
CHR01FS003035973 11.41600 11.46300 11.28000 11.56100 -0.04700
CHR01FS003036888 10.58700 10.84000 10.43900 10.92200 -0.25300
CHR01FS003037908 12.55800 12.39400 12.46100 12.48800 0.16400
CHR01FS003039052 10.85600 11.17700 10.71000 11.27000 -0.32100
CHR01FS003040093 11.06600 10.67100 10.92300 10.74400 0.39600

Total number of rows: 2149887

Table truncated, full table size 128742 Kbytes.




Supplementary file Size Download File type/resource
GSM265710_136277_SOM01KYE_532.pair.gz 36.4 Mb (ftp)(http) PAIR
GSM265710_136277_SOM01KYE_635.pair.gz 36.5 Mb (ftp)(http) PAIR
Processed data included within Sample table

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