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GEO accession:
Sample GSM266954
Query DataSets for GSM266954
Status
Public on Feb 19, 2009
Title
Postnatal day 10 (P10) stria vascularis Slc26a4 (knockout) mice (sample2)
Sample type
RNA
Source name
Stria Vascularis RNA
Organism
Mus musculus
Characteristics
Strain 129S6, Age 10 days, Tissue Ear
Extracted molecule
total RNA
Extraction protocol
Qiagen extraction kit
Label
Streptavidin
Label protocol
Ovation (NuGen protocol)
Hybridization protocol
Affymetrix small sample
Scan protocol
Affymetrix
Description
Stria vascularis was isolated from the mouse cochlea, RNA was isolated and hybridized on Affymetrix mouse 430.2 chips
Data processing
GCOS software used to obtain data. No normalization performed
Submission date
Feb 20, 2008
Last update date
Aug 28, 2018
Contact name
Philine Wangemann
E-mail(s)
wange@vet.ksu.edu
Phone
785-532-4863
Organization name
Kansas State University
Department
Anatomy and Physiology
Lab
Cell Physiology Laboratory
Street address
1600 Dension Avenue
City
Manhattan
State/province
KS
ZIP/Postal code
66506
Country
USA
Platform ID
GPL1261
Series (1)
GSE10587
Gene expression in stria vascularis of mice lacking Slc26a4 and heterzygous controls before the onset of hearing.
Relations
Reanalyzed by
GSE119085
Data table header descriptions
ID_REF
VALUE
Average intensity
ABS_CALL
Present, Absent, Marginal
DETECTION P-VALUE
p-value
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
791.827
P
4.42873e-05
AFFX-BioB-M_at
1387.05
P
4.42873e-05
AFFX-BioB-3_at
1092.8
P
4.42873e-05
AFFX-BioC-5_at
2661.25
P
4.42873e-05
AFFX-BioC-3_at
2031.92
P
4.42873e-05
AFFX-BioDn-5_at
5660.09
P
4.42873e-05
AFFX-BioDn-3_at
7643.49
P
4.42873e-05
AFFX-CreX-5_at
15885
P
5.16732e-05
AFFX-CreX-3_at
14765.4
P
4.42873e-05
AFFX-DapX-5_at
7.75271
A
0.156732
AFFX-DapX-M_at
1.55554
A
0.760937
AFFX-DapX-3_at
12.6792
A
0.0894781
AFFX-LysX-5_at
0.663449
A
0.9273
AFFX-LysX-M_at
5.35241
A
0.102145
AFFX-LysX-3_at
5.87387
A
0.672935
AFFX-PheX-5_at
0.860873
A
0.712257
AFFX-PheX-M_at
2.99261
A
0.645547
AFFX-PheX-3_at
6.02928
A
0.41138
AFFX-ThrX-5_at
8.74274
A
0.16584
AFFX-ThrX-M_at
2.98283
A
0.617401
Total number of rows:
45101
Table truncated, full table size
1407 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM266954.CEL.gz
4.1 Mb
(ftp)
(http)
CEL
GSM266954.CHP.gz
240.1 Kb
(ftp)
(http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file
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