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Sample GSM2670895 Query DataSets for GSM2670895
Status Public on Dec 31, 2017
Title Recurrence_Endom Cancer_1
Sample type RNA
 
Source name Endometrium cancer
Organism Homo sapiens
Characteristics recurrence: Recurrence +
sample origin: FPPE section
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using the miRNeasy FFPE Kit (Qiagen, Courtaboeuf, France), according to the manufacturer's instructions.
Label biotin
Label protocol After validation of the RNA quality with Bioanalyzer 2100, 1 µg of total RNA was biotin labelled following the FlashTag Biotin HSR RNA labelling kit (Affymetrix).
 
Hybridization protocol Following fragmentation, mirRNA targets were hybridized for 20 hr at 48C on mirRNA-40 Affymetrix. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the GCS 3000 scanner (Affymetrix)
Data processing The data were preprocessed and analyzing using Partek Genomic Suite and the customed cdf brain Array V21 (http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/21.0.0/mirbasef.asp) with mirID as identifiers.
 
Submission date Jun 15, 2017
Last update date Jan 23, 2018
Contact name Céline Méhats
E-mail(s) celine.mehats@inserm.fr
Organization name Inserm
Department U1016
Street address 24 rue du Faubourg St jacques
City Paris
ZIP/Postal code 75014
Country France
 
Platform ID GPL23587
Series (1)
GSE100078 Identification of micro-RNA expression profile related to recurrence in women with ESMO low-risk endometrial cancer

Data table header descriptions
ID_REF
VALUE RMA

Data table
ID_REF VALUE
HAIRPIN_hsa-let-7a-1_at 1.91747
HAIRPIN_hsa-let-7a-2_at 2.33611
HAIRPIN_hsa-let-7a-3_at 1.73268
HAIRPIN_hsa-let-7b_at 2.23473
HAIRPIN_hsa-let-7c_at 1.92635
HAIRPIN_hsa-let-7d_at 3.44017
HAIRPIN_hsa-let-7e_at 1.90809
HAIRPIN_hsa-let-7f-1_at 1.90932
HAIRPIN_hsa-let-7f-2_at 1.44909
HAIRPIN_hsa-let-7g_at 1.97735
HAIRPIN_hsa-let-7i_at 1.72038
HAIRPIN_hsa-mir-100_at 2.93777
HAIRPIN_hsa-mir-101-1_at 1.36987
HAIRPIN_hsa-mir-101-2_at 1.37651
HAIRPIN_hsa-mir-103a-1_at 1.16998
HAIRPIN_hsa-mir-103a-2_at 1.30592
HAIRPIN_hsa-mir-103b-1_at 1.15192
HAIRPIN_hsa-mir-103b-2_at 1.29583
HAIRPIN_hsa-mir-105-1_at 1.45203
HAIRPIN_hsa-mir-105-2_at 1.42005

Total number of rows: 4458

Table truncated, full table size 141 Kbytes.




Supplementary file Size Download File type/resource
GSM2670895_R+1_LREC-70B.CEL.gz 781.1 Kb (ftp)(http) CEL
Processed data included within Sample table

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