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Sample GSM2670900 Query DataSets for GSM2670900
Status Public on Dec 31, 2017
Title Recurrence_Endom Cancer_6
Sample type RNA
 
Source name Endometrium cancer
Organism Homo sapiens
Characteristics recurrence: Recurrence +
sample origin: FPPE section
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using the miRNeasy FFPE Kit (Qiagen, Courtaboeuf, France), according to the manufacturer's instructions.
Label biotin
Label protocol After validation of the RNA quality with Bioanalyzer 2100, 1 µg of total RNA was biotin labelled following the FlashTag Biotin HSR RNA labelling kit (Affymetrix).
 
Hybridization protocol Following fragmentation, mirRNA targets were hybridized for 20 hr at 48C on mirRNA-40 Affymetrix. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the GCS 3000 scanner (Affymetrix)
Data processing The data were preprocessed and analyzing using Partek Genomic Suite and the customed cdf brain Array V21 (http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/21.0.0/mirbasef.asp) with mirID as identifiers.
 
Submission date Jun 15, 2017
Last update date Jan 23, 2018
Contact name Céline Méhats
E-mail(s) celine.mehats@inserm.fr
Organization name Inserm
Department U1016
Street address 24 rue du Faubourg St jacques
City Paris
ZIP/Postal code 75014
Country France
 
Platform ID GPL23587
Series (1)
GSE100078 Identification of micro-RNA expression profile related to recurrence in women with ESMO low-risk endometrial cancer

Data table header descriptions
ID_REF
VALUE RMA

Data table
ID_REF VALUE
HAIRPIN_hsa-let-7a-1_at 1.67624
HAIRPIN_hsa-let-7a-2_at 2.08154
HAIRPIN_hsa-let-7a-3_at 1.51325
HAIRPIN_hsa-let-7b_at 1.92286
HAIRPIN_hsa-let-7c_at 1.66668
HAIRPIN_hsa-let-7d_at 2.90144
HAIRPIN_hsa-let-7e_at 2.00034
HAIRPIN_hsa-let-7f-1_at 1.5306
HAIRPIN_hsa-let-7f-2_at 1.08699
HAIRPIN_hsa-let-7g_at 1.52269
HAIRPIN_hsa-let-7i_at 1.81594
HAIRPIN_hsa-mir-100_at 2.13132
HAIRPIN_hsa-mir-101-1_at 1.29347
HAIRPIN_hsa-mir-101-2_at 1.27239
HAIRPIN_hsa-mir-103a-1_at 1.84362
HAIRPIN_hsa-mir-103a-2_at 1.88867
HAIRPIN_hsa-mir-103b-1_at 1.85718
HAIRPIN_hsa-mir-103b-2_at 1.89458
HAIRPIN_hsa-mir-105-1_at 1.31065
HAIRPIN_hsa-mir-105-2_at 1.29762

Total number of rows: 4458

Table truncated, full table size 141 Kbytes.




Supplementary file Size Download File type/resource
GSM2670900_R+6_LREC-64G.CEL.gz 823.4 Kb (ftp)(http) CEL
Processed data included within Sample table

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