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Sample GSM2670914 Query DataSets for GSM2670914
Status Public on Dec 31, 2017
Title NoRecurrence_Endom Cancer_13_matched7
Sample type RNA
 
Source name Endometrium cancer
Organism Homo sapiens
Characteristics recurrence: Recurrence -
sample origin: FPPE section
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using the miRNeasy FFPE Kit (Qiagen, Courtaboeuf, France), according to the manufacturer's instructions.
Label biotin
Label protocol After validation of the RNA quality with Bioanalyzer 2100, 1 µg of total RNA was biotin labelled following the FlashTag Biotin HSR RNA labelling kit (Affymetrix).
 
Hybridization protocol Following fragmentation, mirRNA targets were hybridized for 20 hr at 48C on mirRNA-40 Affymetrix. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the GCS 3000 scanner (Affymetrix)
Data processing The data were preprocessed and analyzing using Partek Genomic Suite and the customed cdf brain Array V21 (http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/21.0.0/mirbasef.asp) with mirID as identifiers.
 
Submission date Jun 15, 2017
Last update date Jan 23, 2018
Contact name Céline Méhats
E-mail(s) celine.mehats@inserm.fr
Organization name Inserm
Department U1016
Street address 24 rue du Faubourg St jacques
City Paris
ZIP/Postal code 75014
Country France
 
Platform ID GPL23587
Series (1)
GSE100078 Identification of micro-RNA expression profile related to recurrence in women with ESMO low-risk endometrial cancer

Data table header descriptions
ID_REF
VALUE RMA

Data table
ID_REF VALUE
HAIRPIN_hsa-let-7a-1_at 1.98601
HAIRPIN_hsa-let-7a-2_at 2.43465
HAIRPIN_hsa-let-7a-3_at 1.80039
HAIRPIN_hsa-let-7b_at 2.38456
HAIRPIN_hsa-let-7c_at 1.81717
HAIRPIN_hsa-let-7d_at 3.73333
HAIRPIN_hsa-let-7e_at 2.30676
HAIRPIN_hsa-let-7f-1_at 1.55228
HAIRPIN_hsa-let-7f-2_at 1.31317
HAIRPIN_hsa-let-7g_at 1.71411
HAIRPIN_hsa-let-7i_at 1.48546
HAIRPIN_hsa-mir-100_at 1.42545
HAIRPIN_hsa-mir-101-1_at 1.24763
HAIRPIN_hsa-mir-101-2_at 1.18846
HAIRPIN_hsa-mir-103a-1_at 1.4563
HAIRPIN_hsa-mir-103a-2_at 1.55722
HAIRPIN_hsa-mir-103b-1_at 1.46556
HAIRPIN_hsa-mir-103b-2_at 1.54759
HAIRPIN_hsa-mir-105-1_at 1.18877
HAIRPIN_hsa-mir-105-2_at 1.15997

Total number of rows: 4458

Table truncated, full table size 141 Kbytes.




Supplementary file Size Download File type/resource
GSM2670914_RT-13_LREC-110S.CEL.gz 774.3 Kb (ftp)(http) CEL
Processed data included within Sample table

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