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Sample GSM2677520 Query DataSets for GSM2677520
Status Public on Jan 22, 2018
Title dyw2_HE_3
Sample type SRA
 
Source name dyw2_HE_3
Organism Arabidopsis thaliana
Characteristics genotype: mutant (dyw2 Heterozygote)
tissue: flower bud,rosette,stem
developmental stage: boyes: 5.10
Growth protocol Media=soil hygrometry=60% Temperature=18°C/20°C (night/day) Light=8h/16h (night/day)
Extracted molecule total RNA
Extraction protocol rna_selection:ribosomal depletion, single, stranded:yes, Protocol:truseq-stranded-total-rna-sample-prep-guide-15 031048-E.pdf
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
 
Data processing Mapping and counts of reads by locus gene (tophat2/bowtie2). If PE reads, count only consistent PE reads
Genome_build: TAIR10
Supplementary_files_format_and_content: type:count file (txt); content:gene ID,length of Gene,nb single reads,nb PE reads
 
Submission date Jun 21, 2017
Last update date May 15, 2019
Contact name Véronique BRUNAUD
E-mail(s) veronique.brunaud@inrae.fr
Organization name INRA - CNRS - UPSUD
Lab IPS2
Street address rue Noetzlin
City Gif-sur-Yvette
ZIP/Postal code 91190
Country France
 
Platform ID GPL19580
Series (1)
GSE100298 Dyw2-DYW2_OTP100: Identification of the transcriptome defects (nuclear and organelles) of the T-DNA KO mutants of DYW2 and OTP100
Relations
BioSample SAMN07260755
SRA SRX2940971

Supplementary file Size Download File type/resource
GSM2677520_samcount_dyw2_WT_rep3.txt.gz 211.7 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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