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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jul 14, 2004 |
| Title |
TXPBL5 |
| Sample type |
RNA |
| |
|
| Source name |
PBL
|
| Organism |
Homo sapiens |
| Extracted molecule |
total RNA |
| |
|
| Description |
Clinical status: PBL sample from patient with well-functioning transplant with no clinical evidence of rejection
Age: 36
Sex: Female
Immunosupression: CsA/MMF/P
Histopathology: none
Donor type: CAD
Scr (mg/dL): 1.1
Days post transplant: 1278
Abbreviations used in sample description: Abreviations used to describe patient samples include the following: BX - Biopsy; PBL- Peripheral Blood Lymphocytes; CsA -Cyclosporine; MMF - Mycophenolate Mofetil; P - Prednisone; FK - Tacrolimus; SRL - Sirolimus; CAD -Cadaveric; LD - Live Donor; Scr - Serum Creatinine; ATN - Acute Tubular Necrosis CNI - Calcineurin Inhibitor; FSGS - Focal Segmental Glomerulosclerosis
Keywords = DNA microarrays, gene expression, kidney, rejection, transplant
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| |
|
| Submission date |
Jul 14, 2004 |
| Last update date |
Mar 16, 2009 |
| Contact name |
Steven Head |
| E-mail(s) |
shead@scripps.edu
|
| Phone |
858 784-2263
|
| Organization name |
The Scripps Research Institute
|
| Street address |
10550 N Torrey Pines Rd
|
| City |
La Jolla |
| State/province |
CA |
| ZIP/Postal code |
92037 |
| Country |
USA |
| |
|
| Platform ID |
GPL8300 |
| Series (1) |
| GSE1563 |
Kidney Transplant Rejection and Tissue Injury by Gene Profiling of Biopsies and Peripheral Blood Lymphocytes |
|
| Data table header descriptions |
| ID_REF |
|
| VALUE |
estimate of relative transcript abundance using dChip PM only model. |
| ABS_CALL |
the call in an MAS 5.0 absolute analysis that indicates if the transcript was present (P), absent (A) or marginal (M) |
| DETECTION P-VALUE |
'detection p-value', MAS 5.0 p-value that indicates the significance level of the detection call |
| Data table |
| ID_REF |
VALUE |
ABS_CALL |
DETECTION P-VALUE |
| AFFX-MurIL2_at |
216.919 |
A |
0.92730 |
| AFFX-MurIL10_at |
194.336 |
A |
0.47024 |
| AFFX-MurIL4_at |
87.4396 |
A |
0.54459 |
| AFFX-MurFAS_at |
63.2251 |
A |
0.54459 |
| AFFX-BioB-5_at |
553.144 |
P |
0.00110 |
| AFFX-BioB-M_at |
610.295 |
P |
0.00030 |
| AFFX-BioB-3_at |
767.33 |
P |
0.00256 |
| AFFX-BioC-5_at |
1338.19 |
P |
0.00045 |
| AFFX-BioC-3_at |
1232.28 |
P |
0.00013 |
| AFFX-BioDn-5_at |
1012.03 |
P |
0.00007 |
| AFFX-BioDn-3_at |
4574.57 |
P |
0.00011 |
| AFFX-CreX-5_at |
6102.13 |
P |
0.00004 |
| AFFX-CreX-3_at |
8130.05 |
P |
0.00004 |
| AFFX-BioB-5_st |
123.341 |
A |
0.42596 |
| AFFX-BioB-M_st |
206.498 |
A |
0.64555 |
| AFFX-BioB-3_st |
240.804 |
A |
0.91641 |
| AFFX-BioC-5_st |
207.549 |
A |
0.91052 |
| AFFX-BioC-3_st |
249.029 |
A |
0.61740 |
| AFFX-BioDn-5_st |
468.405 |
A |
0.32708 |
| AFFX-BioDn-3_st |
523.526 |
A |
0.20573 |
Total number of rows: 12625
Table truncated, full table size 334 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM26823.CEL.gz |
2.8 Mb |
(ftp)(http) |
CEL |
| GSM26823.EXP.gz |
340 b |
(ftp)(http) |
EXP |
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