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Sample GSM27 Query DataSets for GSM27
Status Public on Jan 24, 2001
Title NHGRI_TD-1638
Sample type RNA
 
Channel 1
Source name melanoma, paraspinous
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name NHGRI_Melanoma_Ref
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Biopsy location: paraspinous
Patient sex: male
Patient age: 49
Passage number: biopsy
p16 mutation status: ND
Invasive ability: ND
Vasculogenic mimicry: ND
Gel contraction: ND
Cell motility: ND
Scratch wound (%): ND

See http://www.nhgri.nih.gov/DIR/Microarray/Nature_paper.pdf
and http://www.nhgri.nih.gov/DIR/Microarray/Melanoma_Supplement/index.html
 
Submission date Jan 08, 2001
Last update date May 27, 2005
Contact name Michael Bittner
E-mail(s) mbittner@nhgri.nih.gov
Phone 301-496-7980
Fax 301-402-3241
URL http://www.nhgri.nih.gov/Intramural_research/People/bittnerm.html
Organization name NHGRI, NIH
Department Cancer Genetics Branch
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL7
Series (1)
GSE1 NHGRI_Melanoma_class

Data table header descriptions
ID_REF
CH1_TARGET_TOP Sample 1 (Red Channel) target location in image - top
CH1_TARGET_LT Sample 1 (Red Channel) target location in image - left
CH1_TARGET_BOT Sample 1 (Red Channel) target location in image - bottom
CH1_TARGET_RT Sample 1 (Red Channel) target location in image - right
CH1_RAW Sample 1 (Red Channel) Total Intensity
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_AREA Sample 1 (Red Channel) Area
CH1_BKD_MEAN Sample 1 (Red Channel) Mean Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_TARGET_TOP Sample 2 (Green Channel) target location in image - top
CH2_TARGET_LT Sample 2 Green Channel) target location in image - left
CH2_TARGET_BOT Sample 2 Green Channel) target location in image - bottom
CH2_TARGET_RT Sample 2 Green Channel) target location in image - right
CH2_RAW Sample 2 Green Channel) Total Intensity
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_AREA Sample 2 Green Channel) Area
CH2_BKD_MEAN Sample 2 Green Channel) Mean Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
UNION_AREA Union Area
RATIO Raw Ratio
VALUE log ratio of PRE_VALUE
CONF_LEVEL Confidence Level - fixed at 99%
CONF_LOW Confidence Interval - Lower Bound - Raw Ratio
CONF_UP Confidence Interval - Upper Bound - Raw Ratio
NORM_FACTOR M-value
CV Coefficient of variance
PRE_VALUE Calibrated Ratio

Data table
ID_REF CH1_TARGET_TOP CH1_TARGET_LT CH1_TARGET_BOT CH1_TARGET_RT CH1_RAW CH1_MEAN CH1_SD CH1_AREA CH1_BKD_MEAN CH1_BKD_SD CH2_TARGET_TOP CH2_TARGET_LT CH2_TARGET_BOT CH2_TARGET_RT CH2_RAW CH1_MEAN CH2_SD CH2_AREA CH2_BKD_MEAN CH2_BKD_SD UNION_AREA RATIO VALUE CONF_LEVEL CONF_LOW CONF_UP NORM_FACTOR CV PRE_VALUE
1 84 150 102 168 876561 5206.7 1654.3 134 1536.0 272.0 84 150 102 168 1735389 8677.0 3075.0 127 4672.1 295.1 138 0.600 -0.2831623 99.000 0.380 3.500 1.152 0.247 0.521
2 102 150 120 168 1123289 7033.6 2217.2 136 1541.1 269.9 102 150 120 168 1548400 7147.2 2463.6 129 4672.6 290.8 139 0.984 -0.0685423 99.000 0.380 3.500 1.152 0.247 0.854
3 120 150 138 168 53351 1286.8 235.4 27 1521.1 251.7 120 150 138 168 111994 1225.9 413.8 19 4668.5 283.9 27 1.050 -0.0404823 99.000 0.380 3.500 1.152 0.247 0.911
4 138 150 156 168 402840 2033.3 576.1 118 1563.5 278.1 138 150 156 168 667829 1283.4 519.3 95 4679.4 287.4 120 1.584 0.1383033 99.000 0.380 3.500 1.152 0.247 1.375
5 157 150 175 168 412053 2015.8 752.5 115 1567.3 283.2 157 150 175 168 879071 2974.0 1210.1 115 4670.1 287.8 123 0.678 -0.2306233 99.000 0.380 3.500 1.152 0.247 0.588
6 175 150 193 168 363795 1687.3 546.7 118 1560.9 282.1 175 150 193 168 612488 812.2 440.5 46 4656.5 280.3 120 2.077 0.2559963 99.000 0.380 3.500 1.152 0.247 1.803
7 193 150 211 168 457456 2148.7 679.1 123 1570.5 293.3 193 150 211 168 797040 1830.8 787.2 109 4649.2 277.2 131 1.174 0.0081743 99.000 0.380 3.500 1.152 0.247 1.019
8 211 150 229 168 1269426 9013.8 2642.4 127 1564.8 299.3 211 150 229 168 1883396 11019.7 4182.8 111 4675.3 293.9 128 0.818 -0.1487423 99.000 0.380 3.500 1.152 0.247 0.710
9 229 150 247 168 1047764 6511.8 2029.7 132 1548.0 294.1 229 150 247 168 1513295 6964.1 2349.3 127 4676.7 300.4 138 0.935 -0.0904443 99.000 0.380 3.500 1.152 0.247 0.812
10 248 150 266 168 3097720 21399.9 9057.1 143 1546.2 294.1 248 150 266 168 2253250 12021.1 5870.4 116 4669.6 296.6 143 1.780 0.1889283 99.000 0.380 3.500 1.152 0.247 1.545
11 266 150 284 168 425385 2110.0 701.7 116 1525.8 287.6 266 150 284 168 1786440 10598.8 4328.2 113 4669.9 300.7 125 0.199 -0.7619543 99.000 0.380 3.500 1.152 0.247 0.173
12 284 150 302 168 1715393 11988.9 4786.4 135 1518.1 286.8 284 150 302 168 3298199 21316.9 9948.1 116 4653.2 298.8 135 0.562 -0.3115803 99.000 0.380 3.500 1.152 0.247 0.488
13 77 762 95 780 321151 1954.8 765.5 93 1574.4 310.7 77 762 95 780 534326 1282.5 569.1 75 4589.2 273.0 99 1.524 0.1215603 99.000 0.380 3.500 1.152 0.247 1.323
14 95 762 113 780 1 1.0 0.0 0 1566.4 312.3 95 762 113 780 1 1.0 0.0 0 4577.7 271.5 0 1.000 -0.0614803 99.000 0.380 3.500 1.152 0.247 0.868
15 113 762 131 780 394236 2009.7 811.4 109 1542.0 295.2 113 762 131 780 1145094 5700.3 2515.8 104 4615.9 289.9 119 0.353 -0.5142793 99.000 0.380 3.500 1.152 0.247 0.306
16 132 762 150 780 368413 1970.8 631.3 111 1504.8 267.8 132 762 150 780 1190601 6636.3 2396.6 104 4595.8 276.4 114 0.297 -0.5883803 99.000 0.380 3.500 1.152 0.247 0.258
17 150 762 168 780 479107 3634.7 1398.9 98 1517.0 273.4 150 762 168 780 589677 1703.9 842.1 80 4636.7 294.5 101 2.133 0.2676413 99.000 0.380 3.500 1.152 0.247 1.852
18 168 762 186 780 2400069 16119.2 6489.0 144 1528.3 271.1 168 762 186 780 2623323 14651.5 6694.7 115 4637.6 286.4 144 1.100 -0.0199973 99.000 0.380 3.500 1.152 0.247 0.955
19 187 762 205 780 320221 2080.7 887.6 92 1558.1 291.1 187 762 205 780 569698 1834.3 939.1 77 4639.5 286.7 96 1.134 -0.0065643 99.000 0.380 3.500 1.152 0.247 0.985
20 205 762 223 780 5179370 36775.9 18519.2 143 1589.8 300.8 205 762 223 780 3808954 23550.5 13437.4 124 4664.0 299.8 143 1.562 0.1322603 99.000 0.380 3.500 1.152 0.247 1.356

Total number of rows: 8192

Table truncated, full table size 1269 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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