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Sample GSM27148 Query DataSets for GSM27148
Status Public on Nov 05, 2004
Title HNF1b_2b-
Sample type RNA
Source name INS-1 cell line #2b with non-induced HNF1b
Organism Rattus norvegicus
Extracted molecule total RNA
Description A rat insulinoma cell line (INS-1) was generated that contains a FRT site for FLP recombinase mediated site specific integration of specific genes. In addition, the line contains the tetracycline repressor allowing tetracycline (tet) induction of the introduced gene. By comparing the gene expression profiles of uninduced and tet-induced cells, target genes of introduced transcription factors can be identified. This entry corresponds to the RNA isolated from uninduced INS-1 cell line #2b containing hepatocyte nuclear factor-1b (HNF1b).
Keywords = INS-1
Keywords = beta-cell
Keywords = HNF1b
Keywords = tetracycline
Keywords = FRT
Submission date Jul 21, 2004
Last update date May 27, 2005
Contact name Ludger Klein-Hitpass
Phone +49 201 723 85552
Organization name Institut fuer Zellbiologie
Department Universitaetsklinikum
Lab BioChip Lab
Street address Virchowstr. 173
City Essen
ZIP/Postal code D-45122
Country Germany
Platform ID GPL341
Series (3)
GSE1589 Targets of HNF1b, HNF4a2 and HNF6 in INS-1 cells
GSE1590 Targets of HNF1b mutants in INS-1
GSE6428 HNF1b, HNF4a2 and HNF6 targets

Data table header descriptions
VALUE ‘signal’, a measure of the abundance of the transcript
ABS_CALL the call in an absolute analysis that indicates whether a transcript is reliably detected (Present, P) or not detected (Absent, A)
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 271.9 P 0.002556
AFFX-BioB-M_at 551.3 P 0.000195
AFFX-BioB-3_at 172.4 P 0.004484
AFFX-BioC-5_at 728.8 P 0.00006
AFFX-BioC-3_at 359.2 P 0.00007
AFFX-BioDn-5_at 867.6 P 0.000581
AFFX-BioDn-3_at 4403.4 P 0.00034
AFFX-CreX-5_at 6873.3 P 0.000044
AFFX-CreX-3_at 11480.3 P 0.000044
AFFX-DapX-5_at 161.9 P 0.000081
AFFX-DapX-M_at 312 P 0.006187
AFFX-DapX-3_at 268.8 P 0.000446
AFFX-LysX-5_at 2547.9 P 0.000044
AFFX-LysX-M_at 3434.2 P 0.000044
AFFX-LysX-3_at 5638.9 P 0.000044
AFFX-PheX-5_at 5211.8 P 0.000044
AFFX-PheX-M_at 5821.3 P 0.000044
AFFX-PheX-3_at 5954.3 P 0.000044
AFFX-ThrX-5_at 702.7 P 0.00007
AFFX-ThrX-M_at 956.1 P 0.000044

Total number of rows: 15923

Table truncated, full table size 432 Kbytes.

Supplementary data files not provided

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