GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM272652
Query DataSets for GSM272652
Status
Public on May 01, 2008
Title
Drosophila melanogaster S2-GMR, first biological replicate
Sample type
SRA
Source name
Drosophila melanogaster S2 cell
Organism
Drosophila melanogaster
Characteristics
D. melanogaster S2 cells from Gerard Rubin's lab
Extracted molecule
total RNA
Extraction protocol
total RNA from S2 cell, ~18-26nt RNAs isolated using PAGE, ligation to adapters requires 5' monophosphate and 3' OH
Library strategy
OTHER
Library source
transcriptomic
Library selection
other
Instrument model
Illumina Genome Analyzer
Description
small RNAs
Data processing
raw sequences were clipped by 3' linker sequences recognition, and select clipped sequences longer than 18 nt
Submission date
Mar 11, 2008
Last update date
May 15, 2019
Contact name
Wei-Jen Chung
Phone
212-6395549
Organization name
Sloan-Kettering Institute
Department
Developmental Biology
Lab
Lai
Street address
430 E 67th St
City
New York
State/province
NY
ZIP/Postal code
10021
Country
USA
Platform ID
GPL9058
Series (2)
GSE10794
Drosophila melanogaster small RNA sequence: cell lines and imaginal disc
GSE11624
Drosophila melanogaster small RNA sequence from 14 libraries
Relations
SRA
SRX029067
BioSample
SAMN00116360
Data table header descriptions
SEQUENCE
COUNT
number of times small RNA was sequenced
Data table
SEQUENCE
COUNT
CTGCCCAGTGCTCTGAATGTAAAAGTGAAGAATTT
1
GTGTACTTTCGAAATGGCCGACA
1
TATACCAAATTCACCTAAATCT
1
GGTTAAAACAAATTTCTTTTCA
1
GCGTCAAAATGACTGTGACTATG
2
GAAATTTCTTTAAGCCTTACCT
2
GTTGTGTCGATATTTTCTCCTCG
7
AGTCTGTTCGACTTTTAAATTCTTA
1
GGGACGGAGAAAGGATAAGAGC
1
CGTAGTTGAACTTGTGCTTCAT
1
CTGGTGCAGCTATTCACCAAG
1
AATTAATAAACCTAATAGCGT
1
TATTATGAGAATAGTGTGCATTTT
4
GAGGGACTGCGGGAGGAG
1
CGCCCTAGCTCTAACCATA
3
CCCTCTGATTTGCAATTAACC
1
TTCCCGGCATCTTCACCA
1
GCTGCTGCTCACCCCCTCCT
1
GAGGTTTCCTTGAAGATGGCTTA
1
GCATGGAGCTGCCCTTGGTACAG
1
Total number of rows:
599991
Table truncated, full table size
14674 Kbytes
.
Supplementary data files not provided
SRA Run Selector
Raw data are available in SRA
Processed data included within Sample table
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
