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Sample GSM2739883 Query DataSets for GSM2739883
Status Public on Feb 06, 2018
Title TAC_3 [transcriptome]
Sample type RNA
 
Source name Kidney, tacrolimus
Organism Mus musculus
Characteristics strain/background: CD-1
tissue: Kidney (total)
treatment: Tacrolimus
amount in (ug): 0.2
rin number: 9
Treatment protocol CD-1 mice were treated with Tacrolimus (1mg/kg/d for 28 days) or physiological serum as control.
Extracted molecule total RNA
Extraction protocol Total RNAs were extracted from kidneys using miRNeasy Mini kit (Qiagen).
Label Cy3
Label protocol Agilent - Low RNA input QuickAmp.
 
Hybridization protocol Agilent : 200.0 ng at 65 degree_C during 17 hours.
Scan protocol Arrays were scanned using the Agilent SureScan High Resolution Scanner.
Description TAC_3
RNA extracted from tacrolimus-treated mouse kidneys (Replicate 3).
Data processing Feature extraction data processing. Quantile normalization and differential analysis using Limma package in R / Bioconductor.
 
Submission date Aug 10, 2017
Last update date Feb 07, 2018
Contact name Kevin Lebrigand
Organization name IPMC/CNRS
Lab Functional Genomics Platform of Nice-Sophia-Antipolis, France.
Street address 660 route des lucioles
City Valbonne - Sophia-Antipolis
ZIP/Postal code 06560
Country France
 
Platform ID GPL13912
Series (2)
GSE102513 Tacrolimus-induced nephrotoxicity in mice is associated with microRNA deregulation [transcriptome analysis]
GSE102515 Tacrolimus-induced nephrotoxicity in mice is associated with microRNA deregulation

Data table header descriptions
ID_REF
VALUE Log2 normalized signal

Data table
ID_REF VALUE
1 15.30301368
2 4.731319031
3 5.317412614
4 5.074141463
5 7.422064766
6 6.070791809
7 5.025139562
8 11.99848025
9 4.936637939
10 6.326429487
11 5.631177056
12 4.906890596
13 8.874405076
14 12.86246786
15 5.400879436
16 5.074141463
17 11.3264646
18 8.322491538
19 10.56756993
20 16.50182358

Total number of rows: 62976

Table truncated, full table size 1089 Kbytes.




Supplementary file Size Download File type/resource
GSM2739883_US10293826_252800522000_S01_GE1_107_Sep09_2_3.txt.gz 11.8 Mb (ftp)(http) TXT
Processed data included within Sample table

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