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Sample GSM2741343 Query DataSets for GSM2741343
Status Public on Dec 30, 2023
Title US-1457772_13-VIS05-D37_L6.D708
Sample type SRA
 
Source name PBMC
Organism Homo sapiens
Characteristics cell type: PBMC
subject id: 13
time point: D37
timepoint_description: One week after 2nd vaccination
Extracted molecule total RNA
Extraction protocol Paxgene RNA
GlobinClear Globin transcript reduction followed by Illumina mRNA-Seq; 51bp PE
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
 
Data processing Alignment STAR version STAR_2.3.1d
Sequenced reads were filtered for low-quality sequence and the presence of 'N's, then mapped to hg19 whole genome using star STAR_2.3.1d
Gene counts were calculated by using HTSeq count
Genome_build: hg19
Supplementary_files_format_and_content: tab delimited file including the raw read counts for all the detected genes
 
Submission date Aug 11, 2017
Last update date Dec 30, 2023
Contact name Daniel Zak
Organization name Regeneron
Lab Data Sciences
Street address 188 East Blaine Street, Suite 300
City Seattle
State/province WA
ZIP/Postal code 98102
Country USA
 
Platform ID GPL11154
Series (1)
GSE102574 RNA-Seq analysis of the TB-019 GSK M72/AS01E trialĀ 
Relations
BioSample SAMN07500851
SRA SRX3089752

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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