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| Status |
Public on Sep 12, 2017 |
| Title |
Y1.7-NSG-Pdl2OE-BRAFi-2 |
| Sample type |
SRA |
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| Source name |
Y1.7-NSG-Pdl2OE-BRAFi
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| Organism |
Mus musculus |
| Characteristics |
tissue: YUMM1.7 melanoma
pd-l2 overexpression: yes
mapki type: BRAFi
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| Extracted molecule |
polyA RNA |
| Extraction protocol |
QIAGEN RNeasy micro kit
TruSeq RNA Sample Preparation Kit v2, unstranded
Poly A transcript enrichment, paired end RNAseq
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 3000 |
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| Description |
YUMM1.7 melanoma tumor with PD-L2 overexpression in NSG mice, BRAFi treated, 2nd tumor
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| Data processing |
FASTQ files were mapped by Tophat2
Tophat BAMs were quantified and normalized using Cuffnorm, DGE were called by cuffdiff
Genome_build: mm9
Supplementary_files_format_and_content: The normalized expression levels in FPKM called by cuffnorm
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| Submission date |
Sep 11, 2017 |
| Last update date |
Dec 03, 2024 |
| Contact name |
Willy Hugo |
| E-mail(s) |
hwilly@mednet.ucla.edu
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| Organization name |
University of California, Los Angeles
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| Department |
Medicine
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| Street address |
10833 Le Conte Ave
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| City |
Los Angeles |
| State/province |
California |
| ZIP/Postal code |
90095 |
| Country |
USA |
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| Platform ID |
GPL21493 |
| Series (1) |
| GSE103713 |
Expression changes in YUMM1.7 melanoma with/without PD-L2 overexpression under BRAFi treatment in NSG mice [Y1.7.FPKM.batch4] |
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| Relations |
| BioSample |
SAMN07629783 |
| SRA |
SRX3176869 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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