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Sample GSM2787141 Query DataSets for GSM2787141
Status Public on Mar 01, 2018
Title Dlx4-KO P60#2
Sample type SRA
 
Source name Skin
Organism Mus musculus
Characteristics strain: C57BL/6
tissue: Skin
age: Post-natal day 60
genotype: Dlx4-KO
Extracted molecule total RNA
Extraction protocol cDNA was prepared using the NEBnext kit and library was generated using the NuGen kit and Mondrian automated system.
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 3000
 
Data processing Illumina Casava1.8.2 software was used for BCL conversion and demultiplexing
Reads were mapped to mm10 using TopHat 2.1.0 with default settings
RPKM values and ANOVA comparisons were calculated using Partek GS 6.6
Genome_build: mm10
 
Submission date Sep 18, 2017
Last update date May 15, 2019
Contact name Maria Irene Morasso
E-mail(s) morassom@mail.nih.gov
Phone 3014357842
Organization name NIAMS NIH
Lab Laboratory of Skin Biology
Street address Bldg 50
City Bethesda
State/province Maryland
ZIP/Postal code 20892
Country USA
 
Platform ID GPL21493
Series (1)
GSE103971 RNASeq analysis to detect any molecular changes in skin of Dlx4 ablated mice compared to Wild type littermates.
Relations
BioSample SAMN07664540
SRA SRX3196195

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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