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Sample GSM280230 Query DataSets for GSM280230
Status Public on Jun 10, 2008
Title rdr2 inflorescence rep2 SBS
Sample type SRA
 
Source name inflorescence whole
Organism Arabidopsis thaliana
Characteristics floral tissue (up to stage 11/12)
Treatment protocol tissues and cells were harvested on ice
Extracted molecule total RNA
Extraction protocol A conventional Trizol extraction was used for total RNA extraction, followed by oligo (dT) columns for polyA RNA extraction.
Label N/A
Label protocol N/A
 
Library strategy OTHER
Library source transcriptomic
Library selection other
Instrument model Illumina Genome Analyzer
 
Description low molecular weight RNA used
Data processing Raw abundances were normlazed according to the formula: normalized abundance (TP10M)= raw/(total genome match - (t/r/sn/snoRNA)*10,000,000.
 
Submission date Apr 08, 2008
Last update date May 15, 2019
Contact name Marcelo Ariel German
E-mail(s) mgerman@dbi.udel.edu
Organization name Delaware Biotechnology Institute
Street address 15 Innovation Way
City Newark
State/province DE
ZIP/Postal code 19711
Country USA
 
Platform ID GPL9062
Series (1)
GSE11094 Novel microRNA-target RNA pairs revealed by Parallel analysis of RNA ends
Relations
SRA SRX003876
BioSample SAMN02195362

Data table header descriptions
SEQUENCE
COUNT normalized abundance

Data table
SEQUENCE COUNT
AAAAAAAAAAAAAAAAAA 1
AAAAAAAAAAAAAAAAAAAA 1
AAAAAAAAAAAAAAAAAAAAA 1
AAAAAAAAAAAAAAAAAAAAAAA 1
AAAAAAAAAAAAAAAAAAAAAAAAACAAATACC 1
AAAAAAAAAAAAAAAAAAAAAAAAACTACTCCC 1
AAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAA 1
AAAAAAAAAAAAAAAAAAAAAAAACAAACACAA 1
AAAAAAAAAAAAAAAAAAAAAAAACACATGCA 1
AAAAAAAAAAAAAAAAAAAAAAAACATTACCCC 1
AAAAAAAAAAAAAAAAAAAAAAAACCGACTGCC 1
AAAAAAAAAAAAAAAAAAAAAAAACCGCCTCCC 1
AAAAAAAAAAAAAAAAAAAAAAACACAACTACC 1
AAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAA 1
AAAAAAAAAAAAAAAAAAAAAACCAAATCCC 1
AAAAAAAAAAAAAAAAAAAAAACCTATAACCGC 1
AAAAAAAAAAAAAAAAAAAAAACTATCCCCCC 1
AAAAAAAAAAAAAAAAAAAAAATCTATACCCC 1
AAAAAAAAAAAAAAAAAAAAACAAATGCCCTC 1
AAAAAAAAAAAAAAAAAAAAACATATGCCCTC 1

Total number of rows: 902040

Table truncated, full table size 22329 Kbytes.




Supplementary file Size Download File type/resource
GSM280230_s_7_sequence.txt.gz 106.4 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Processed data included within Sample table
Raw data are available in SRA

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