|
Status |
Public on Dec 14, 2018 |
Title |
cl1 (wntlof) |
Sample type |
SRA |
|
|
Source name |
left ventricle
|
Organism |
Mus musculus |
Characteristics |
tissue: heart age: adult genotype: control
|
Extracted molecule |
total RNA |
Extraction protocol |
RNA was isolated from ventricle using Trizol. RNA libraries were made using Illumina protocols
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 3000 |
|
|
Data processing |
Aligned to mus musculus reference build ensembl R76 alinged reads were counted using the featureCounts Subreads package Differential expression analysis was performed from counts file using edgeR Genome_build: mus musculus reference build ensembl R76 Supplementary_files_format_and_content: .txt files of featureCounts and differential expression analysis
|
|
|
Submission date |
Nov 03, 2017 |
Last update date |
May 15, 2019 |
Contact name |
Bo Zhang |
E-mail(s) |
bzhang29@wustl.edu
|
Phone |
3143624757
|
Organization name |
Washington University School of Medicine
|
Department |
Developmental Biology
|
Lab |
Zhang
|
Street address |
4515 McKinley Research Bldg 03212
|
City |
Saint Louis |
State/province |
Missouri |
ZIP/Postal code |
63110 |
Country |
USA |
|
|
Platform ID |
GPL21493 |
Series (2) |
GSE106507 |
Differential Wnt-mediated Programming and Arrhythmogenesis in Right versus Left Ventricles [wntlof] |
GSE106509 |
Differential Wnt-mediated Programming and Arrhythmogenesis in Right versus Left Ventricles |
|
Relations |
BioSample |
SAMN07975512 |
SRA |
SRX3360219 |