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Sample GSM2839405 Query DataSets for GSM2839405
Status Public on Dec 14, 2018
Title cr3 (wntlof)
Sample type SRA
 
Source name right ventricle
Organism Mus musculus
Characteristics tissue: heart
age: adult
genotype: control
Extracted molecule total RNA
Extraction protocol RNA was isolated from ventricle using Trizol.
RNA libraries were made using Illumina protocols
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 3000
 
Data processing Aligned to mus musculus reference build ensembl R76
alinged reads were counted using the featureCounts Subreads package
Differential expression analysis was performed from counts file using edgeR
Genome_build: mus musculus reference build ensembl R76
Supplementary_files_format_and_content: .txt files of featureCounts and differential expression analysis
 
Submission date Nov 03, 2017
Last update date May 15, 2019
Contact name Bo Zhang
E-mail(s) bzhang29@wustl.edu
Phone 3143624757
Organization name Washington University School of Medicine
Department Developmental Biology
Lab Zhang
Street address 4515 McKinley Research Bldg 03212
City Saint Louis
State/province Missouri
ZIP/Postal code 63110
Country USA
 
Platform ID GPL21493
Series (2)
GSE106507 Differential Wnt-mediated Programming and Arrhythmogenesis in Right versus Left Ventricles [wntlof]
GSE106509 Differential Wnt-mediated Programming and Arrhythmogenesis in Right versus Left Ventricles
Relations
BioSample SAMN07975508
SRA SRX3360224

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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