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Sample GSM287521 Query DataSets for GSM287521
Status Public on Jun 18, 2008
Title primitive_hematopoietic_cells_enriched_for_multipotent_progenitors
Sample type SAGE
Anchor NlaIII
Tag Count 206613
Tag Length 17
 
Source name Human embryonic stem cell-derived primitive hematopoietic cells enriched for multipotent progenitors
Organism Homo sapiens
Characteristics Cell line: Human embryonic stem cell line WA01 (H1)
Gender: Male
Karyotype: 46XY
Culture condition: hESC/OP9 coculture day 8 of differentiation
Estimated 19% CFU
Cell purification Method: Immuno-magnetic and Fluorescent Activated Cell Sorting (FACS)
Defining markers: Lin-CD34+CD43+CD45-
Biomaterial provider Department of Pathology and Laboratory Medicine, University of Wisconsin, Madison WI
Growth protocol Growth medium: αMEM (Invitrogen) with 10% FBS (HyClone)
Extracted molecule total RNA
Extraction protocol RiboPureTM Kit (Ambion, Austin, TX)
 
Description Assays to confirm viability: Colony Forming Cell Assay (CFCs)
No PCR amplification before SAGE
 
Submission date May 07, 2008
Last update date Nov 19, 2008
Contact name BCGSC BC Cancer Agency
E-mail(s) support@mouseatlas.org
Organization name Canada's Michael Smith Genome Sciences Centre
Department Gene Expression
Lab Marco Marra
Street address 675 West 10th Avenue
City Vancouver
State/province BC
ZIP/Postal code V5Z 1L3
Country Canada
 
Platform ID GPL1485
Series (1)
GSE11795 Molecular Profiling of Primitive Hematopoietic Cells Generated In Vitro from Human Embryonic Stem Cells and In Vivo during Embryogenesis

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAAAACCCTT 1 4.84
AAAAAAAAAAAATTTGG 1 4.84
AAAAAAAAAAGGTAAAT 1 4.84
AAAAAAAACAATGATCC 1 4.84
AAAAAAAACTTGTGCCT 1 4.84
AAAAAAAACTTGTGTTT 1 4.84
AAAAAAAAGGTTACTAA 1 4.84
AAAAAAAAGTTGAAGGC 1 4.84
AAAAAAAATGAAGTAGG 6 29.04
AAAAAAAATGTTTTTTG 1 4.84
AAAAAAAATTAAACACG 1 4.84
AAAAAAACCATAGGGCC 1 4.84
AAAAAAACCCTGCGGAT 1 4.84
AAAAAAACCCTTTTAAA 1 4.84
AAAAAAACTTCTTTCTC 1 4.84
AAAAAAAGAAAAGATGG 1 4.84
AAAAAAAGGGAATGTGG 1 4.84
AAAAAAAGGGTGCCACC 1 4.84
AAAAAAAGTGGGGGCTG 1 4.84
AAAAAAATGGTGCCTCC 1 4.84

Total number of rows: 29538

Table truncated, full table size 737 Kbytes.




Supplementary data files not provided

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