NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM287608 Query DataSets for GSM287608
Status Public on Oct 01, 2008
Title 18-24hpa regenerating fin fold vs. control
Sample type RNA
 
Channel 1
Source name Total RNA from regenerating18-24hpa fin fold
Organism Danio rerio
Characteristics zebrafish larval fin fold
Treatment protocol Tissues were collected on dryice.
Growth protocol Incubated in the egg water at 28.5 degree for 2 days before amputation
Extracted molecule total RNA
Extraction protocol Total RNA extracted using Trizol following manufacturer's instructions
Label Cy3
Label protocol Amino Allyl MessageAmp™ aRNA kit frim Ambion (performed by DNA CHIP Institute Inc. (Yokohama, Japan))
 
Channel 2
Source name Total RNA from control fin fold corresponding to 18-24hpa
Organism Danio rerio
Characteristics zebrafish larval fin fold
Treatment protocol Tissues were collected on dryice.
Growth protocol Incubated in the egg water at 28.5 degree for 2 days before amputation
Extracted molecule total RNA
Extraction protocol Total RNA extracted using Trizol following manufacturer's instructions
Label Cy5
Label protocol Amino Allyl MessageAmp™ aRNA kit frim Ambion (performed by DNA CHIP Institute Inc. (Yokohama, Japan))
 
 
Hybridization protocol According to manufacturer's instruction (performed by DNA CHIP Institute Inc. (Yokohama, Japan))
Scan protocol performed by DNA CHIP Institute Inc. (Yokohama, Japan)
Description Gene expression profiling of zebrafish larval fin-fold regeneration comparing amputated fin fold and uncut control
Data processing Valid spots: Intensity>BG+2*SD and Ch1_Intensity+Ch2_Intensity>=1000→TRUE; Values were shown only for valid spots.
 
Submission date May 08, 2008
Last update date Jul 25, 2008
Contact name Atsushi Kawakami
E-mail(s) atkawaka@bio.titech.ac.jp
Phone +81-45-924-5717
Fax +81-45-924-5718
Organization name Tokyo Institute of Technology
Department Biological Information
Street address 4259 Nagatsuta, Midori-ku
City Yokohama
ZIP/Postal code 226-8501
Country Japan
 
Platform ID GPL530
Series (1)
GSE11391 Regenerating zebrafish fin fold vs. uncut control

Data table header descriptions
ID_REF
VALUE normalized log 2 (CH1/CH2)

Data table
ID_REF VALUE
1.1.1.1
1.1.1.2
1.1.1.3
1.1.1.4 -0.050564512
1.1.1.5 -0.218487231
1.1.1.6
1.1.1.7 0.139691628
1.1.1.8
1.1.1.9 0.395808999
1.1.1.10 0.049048092
1.1.1.11
1.1.1.12
1.1.1.13 0.029661235
1.1.1.14 -0.457582815
1.1.1.15 -0.327956585
1.1.2.1
1.1.2.2 -0.130730043
1.1.2.3
1.1.2.4
1.1.2.5

Total number of rows: 7680

Table truncated, full table size 122 Kbytes.




Supplementary file Size Download File type/resource
GSM287608.txt.gz 348.1 Kb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap