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Sample GSM28834 Query DataSets for GSM28834
Status Public on Jun 13, 2005
Title lsm1D_3
Sample type RNA
 
Channel 1
Source name lsm1D @ 26 deg
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name BY4741 (wt) @ 26 deg
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description Reference and mutant strains grown at 26oC to an OD of 0.5-0.6 . RNA extracted.
 
Submission date Aug 12, 2004
Last update date Jun 13, 2005
Contact name Todd A Burckin
E-mail(s) burckin@biology.ucsc.edu
Phone 831 459-5245
Fax 831 459-3139
Organization name University of California Santa Cruz
Department Molecular, Cell, & Developmental Biology
Lab Hartzog Lab
Street address 1156 High Street
City Santa Cruz
State/province CA
ZIP/Postal code 95062
Country USA
 
Platform ID GPL1407
Series (1)
GSE1684 Exploring functional relationships between components of the gene expression machinery

Data table header descriptions
ID_REF
X X-coordinate of spot
Y Y-coordinate of spot
Dia. spot diameter in microns
F635 Median Channel 2 (Cy5/635) median pixel intensity - feature
F635 Mean Channel 2 (Cy5/635) mean pixel intensity - feature
F635 SD Channel 2 (Cy5/635) standard deviation of pixel intensities - feature
B635 Median Channel 2 (Cy5/635) median background intensity
B635 Mean Channel 2 (Cy5/635) mean background intensity
B635 SD Channel 2 (Cy5/635) standard deviation of background
% > B635+1SD Channel 2 (Cy5/635) percent of pixels 1 StDev above background
% > B635+2SD Channel 2 (Cy5/635) percent of pixels 2 StDevs above background
F635 % Sat. Channel 2 (Cy5/635) percent of pixels saturated
F532 Median Channel 1 (Cy3/532) median pixel intensity - feature
F532 Mean Channel 1 (Cy3/532) mean pixel intensity - feature
F532 SD Channel 1 (Cy3/532) standard deviation of pixel intensities - feature
B532 Median Channel 1 (Cy3/532) median background intensity
B532 Mean Channel 1 (Cy3/532) mean background intensity
B532 SD Channel 1 (Cy3/532) standard deviation of background
% > B532+1SD Channel 1 (Cy3/532) percent of pixels 1 StDev above background
% > B532+2SD Channel 1 (Cy3/532) percent of pixels 2 StDevs above background
F532 % Sat. Channel 1 (Cy3/532) percent of pixels saturated
Ratio of Medians Ratio of medians (Ch2/Ch1)
Ratio of Means Ratio of means (Ch2/Ch1)
Median of Ratios Median of ratios
Mean of Ratios Mean of ratios
Ratios SD Ratio standard deviation
Rgn Ratio Regression ratio
Rgn Rē
F Pixels Number of feature pixels
B Pixels Number of background pixels
Sum of Medians Sum of medians
Sum of Means Sum of means
VALUE Log ratio (base 2)
F635 Median - B635 Channel 2 (Cy5/635) background subtracted median feature intensity
F532 Median - B532 Channel 1 (Cy3/532) background subtracted median feature intensity
F635 Mean - B635 Channel 2 (Cy5/635) background subtracted mean feature intensity
F532 Mean - B532 Channel 1 (Cy3/532) background subtracted mean feature intensity
Flags User defined flag (default=0)

Data table
ID_REF X Y Dia. F635 Median F635 Mean F635 SD B635 Median B635 Mean B635 SD % > B635+1SD % > B635+2SD F635 % Sat. F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD % > B532+1SD % > B532+2SD F532 % Sat. Ratio of Medians Ratio of Means Median of Ratios Mean of Ratios Ratios SD Rgn Ratio Rgn Rē F Pixels B Pixels Sum of Medians Sum of Means VALUE F635 Median - B635 F532 Median - B532 F635 Mean - B635 F532 Mean - B532 Flags
1 2800 23190 100 907 933 272 829 839 137 35 15 0 440 1491 2050 183 194 55 92 82 0 0.304 0.08 0.73 0.691 3.601 29.378 0.046 80 468 335 1412 -1.72 78 257 104 1308 -50
2 2980 23190 100 831 867 352 821 822 139 27 13 0 179 189 51 183 192 56 18 3 0 -2.5 7.667 5.412 4.758 3.003 16.922 0.052 80 413 6 52 10 -4 46 6 -50
3 3150 23190 100 766 757 247 787 799 135 22 5 0 182 186 42 177 182 45 20 2 0 -4.2 -3.333 4.078 4.604 4.036 14.877 0.05 80 431 -16 -21 -21 5 -30 9 -50
4 3330 23200 100 762 763 242 771 785 121 21 7 0 185 184 38 173 178 43 16 3 0 -0.75 -0.727 4.649 3.505 3.923 19.626 0.04 80 444 3 3 -9 12 -8 11 -50
5 3510 23200 100 692 711 145 779 786 116 8 3 0 181 186 36 174 180 49 15 2 0 -12.429 -5.667 4.275 5.204 4.14 60.812 0.003 80 440 -80 -56 -87 7 -68 12 -50
6 3700 23200 130 5208 5291 832 744 762 286 100 100 0 4055 4179 697 178 193 186 100 100 0 1.151 1.136 1.134 1.135 1.213 1.154 0.934 120 558 8341 8548 0.203 4464 3877 4547 4001 0
7 3870 23200 140 908 946 191 702 725 279 36 7 0 498 512 160 172 188 180 87 44 0 0.632 0.718 0.769 0.687 2.293 0.954 0.288 156 594 532 584 -0.662 206 326 244 340 0
8 4030 23210 100 757 741 227 692 696 117 31 15 0 172 175 44 172 175 41 15 3 0 100000 16.333 4.468 5.577 3.739 22.025 0.022 80 358 65 52 16.61 65 0 49 3 -50
9 4220 23210 130 2489 2586 556 678 684 118 100 99 0 2304 2560 882 169 174 41 100 100 0 0.848 0.798 0.83 0.807 1.302 0.765 0.913 120 598 3946 4299 -0.237 1811 2135 1908 2391 0
10 4390 23210 110 891 905 215 657 666 120 68 47 0 340 351 91 165 171 44 97 88 0 1.337 1.333 1.503 1.326 2.229 2.291 0.208 80 469 409 434 0.419 234 175 248 186 0
11 4560 23220 100 697 736 379 632 643 116 32 18 0 175 178 52 162 169 45 26 6 0 5 6.5 5.625 6.148 3.252 12.587 0.114 80 420 78 120 2.322 65 13 104 16 -50
12 4730 23220 100 684 699 263 612 623 116 37 20 0 158 171 54 164 169 41 16 10 0 -12 12.429 4.553 4.961 3.759 12.106 0.078 80 397 66 94 72 -6 87 7 -50
13 4910 23230 100 710 726 286 633 643 118 38 13 0 172 178 61 162 167 43 16 10 0 7.7 5.813 5.107 5.066 3.455 11.248 0.098 80 409 87 109 2.945 77 10 93 16 -50
14 5080 23230 100 687 694 255 661 667 120 23 10 0 175 177 50 159 169 47 26 5 0 1.625 1.833 4 3.849 3.477 11.298 0.087 80 427 42 51 0.7 26 16 33 18 -50
15 5260 23230 100 680 703 198 649 661 122 30 16 0 187 191 51 158 163 41 41 15 0 1.069 1.636 4.076 3.903 4.039 14.473 0.04 80 439 60 87 0.096 31 29 54 33 -50
16 5440 23240 100 598 609 149 636 642 115 16 3 0 152 158 41 159 163 39 12 3 0 5.429 27 3.588 3.21 4.072 14.603 0.031 80 432 -45 -28 2.441 -38 -7 -27 -1 -50
17 5610 23240 100 626 644 207 624 632 108 21 10 0 162 170 47 161 168 42 23 7 0 2 2.222 3.569 4.206 3.702 23.973 0.015 80 432 3 29 1 2 1 20 9 -50
18 5790 23240 100 614 638 234 619 625 106 30 13 0 155 162 44 159 164 42 16 6 0 1.25 6.333 3.248 3.581 3.541 12.787 0.07 80 432 -9 22 0.322 -5 -4 19 3 -50
19 5960 23250 100 572 586 185 619 626 115 18 8 0 194 200 52 160 167 44 40 16 0 -1.382 -0.825 3.291 2.578 4.538 13.112 0.029 80 432 -13 7 -47 34 -33 40 -50
20 6140 23250 100 621 628 200 596 599 120 22 10 0 157 165 40 158 162 41 22 2 0 -25 4.571 4.599 4.783 3.296 13.267 0.049 80 421 24 39 25 -1 32 7 -50

Total number of rows: 5760

Table truncated, full table size 942 Kbytes.




Supplementary data files not provided

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