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Sample GSM28847 Query DataSets for GSM28847
Status Public on Jun 13, 2005
Title cwc21D_5
Sample type RNA
 
Channel 1
Source name BY4741 (wt) @ 26 deg
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name BY4741 (cwc21D) @ 26 deg
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description Reference and mutant strains grown at 26oC to an OD of 0.5-0.6 . RNA extracted.
Empty cells (no data) are represented by the value -10000
 
Submission date Aug 12, 2004
Last update date Jun 13, 2005
Contact name Todd A Burckin
E-mail(s) burckin@biology.ucsc.edu
Phone 831 459-5245
Fax 831 459-3139
Organization name University of California Santa Cruz
Department Molecular, Cell, & Developmental Biology
Lab Hartzog Lab
Street address 1156 High Street
City Santa Cruz
State/province CA
ZIP/Postal code 95062
Country USA
 
Platform ID GPL1408
Series (1)
GSE1684 Exploring functional relationships between components of the gene expression machinery

Data table header descriptions
ID_REF
X X-coordinate of spot
Y Y-coordinate of spot
Dia. spot diameter in microns
F635 Median Channel 2 (Cy5/635) median pixel intensity - feature
F635 Mean Channel 2 (Cy5/635) mean pixel intensity - feature
F635 SD Channel 2 (Cy5/635) standard deviation of pixel intensities - feature
B635 Median Channel 2 (Cy5/635) median background intensity
B635 Mean Channel 2 (Cy5/635) mean background intensity
B635 SD Channel 2 (Cy5/635) standard deviation of background
% > B635+1SD Channel 2 (Cy5/635) percent of pixels 1 StDev above background
% > B635+2SD Channel 2 (Cy5/635) percent of pixels 2 StDevs above background
F635 % Sat. Channel 2 (Cy5/635) percent of pixels saturated
F532 Median Channel 1 (Cy3/532) median pixel intensity - feature
F532 Mean Channel 1 (Cy3/532) mean pixel intensity - feature
F532 SD Channel 1 (Cy3/532) standard deviation of pixel intensities - feature
B532 Median Channel 1 (Cy3/532) median background intensity
B532 Mean Channel 1 (Cy3/532) mean background intensity
B532 SD Channel 1 (Cy3/532) standard deviation of background
% > B532+1SD Channel 1 (Cy3/532) percent of pixels 1 StDev above background
% > B532+2SD Channel 1 (Cy3/532) percent of pixels 2 StDevs above background
F532 % Sat. Channel 1 (Cy3/532) percent of pixels saturated
F3 Median n/a
F3 Mean n/a
F3 SD n/a
B3 Median n/a
B3 Mean n/a
B3 SD n/a
% > B3+1SD n/a
% > B3+2SD n/a
F3 % Sat. n/a
F4 Median n/a
F4 Mean n/a
F4 SD n/a
B4 Median n/a
B4 Mean n/a
B4 SD n/a
% > B4+1SD
% > B4+2SD n/a
F4 % Sat. n/a
Ratio of Medians (635/532) Ratio of medians (Ch2/Ch1)
Ratio of Means (635/532) Ratio of means (Ch2/Ch1)
Median of Ratios (635/532) Median of ratios
Mean of Ratios (635/532) Mean of ratios
Ratios SD (635/532) Ratio standard deviation
Rgn Ratio (635/532) Regression ratio
Rgn R? (635/532) Regression square ratio
Ratio of Medians (Ratio/2) n/a
Ratio of Means (Ratio/2) n/a
Median of Ratios (Ratio/2) n/a
Mean of Ratios (Ratio/2) n/a
Ratios SD (Ratio/2) n/a
Rgn Ratio (Ratio/2) n/a
Rgn R? (Ratio/2) n/a
Ratio of Medians (Ratio/3) n/a
Ratio of Means (Ratio/3) n/a
Median of Ratios (Ratio/3) n/a
Mean of Ratios (Ratio/3) n/a
Ratios SD (Ratio/3) n/a
Rgn Ratio (Ratio/3) n/a
Rgn R? (Ratio/3) n/a
F Pixels Number of feature pixels
B Pixels Number of background pixels
Sum of Medians Sum of medians
Sum of Means Sum of means
VALUE Log ratio (635/532) (base 2)
Log Ratio (Ratio/2) n/a
Log Ratio (Ratio/3) n/a
F635 Median - B635 Channel 2 (Cy5/635) background subtracted median feature intensity
F532 Median - B532 Channel 1 (Cy3/532) background subtracted median feature intensity
F3 Median - B3 n/a
F4 Median - B4 n/a
F635 Mean - B635 Channel 2 (Cy5/635) background subtracted mean feature intensity
F532 Mean - B532 Channel 1 (Cy3/532) background subtracted mean feature intensity
F3 Mean - B3
F4 Mean - B4
Flags User defined flag (default=0)
Normalize n/a

Data table
ID_REF X Y Dia. F635 Median F635 Mean F635 SD B635 Median B635 Mean B635 SD % > B635+1SD % > B635+2SD F635 % Sat. F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD % > B532+1SD % > B532+2SD F532 % Sat. F3 Median F3 Mean F3 SD B3 Median B3 Mean B3 SD % > B3+1SD % > B3+2SD F3 % Sat. F4 Median F4 Mean F4 SD B4 Median B4 Mean B4 SD % > B4+1SD % > B4+2SD F4 % Sat. Ratio of Medians (635/532) Ratio of Means (635/532) Median of Ratios (635/532) Mean of Ratios (635/532) Ratios SD (635/532) Rgn Ratio (635/532) Rgn R? (635/532) Ratio of Medians (Ratio/2) Ratio of Means (Ratio/2) Median of Ratios (Ratio/2) Mean of Ratios (Ratio/2) Ratios SD (Ratio/2) Rgn Ratio (Ratio/2) Rgn R? (Ratio/2) Ratio of Medians (Ratio/3) Ratio of Means (Ratio/3) Median of Ratios (Ratio/3) Mean of Ratios (Ratio/3) Ratios SD (Ratio/3) Rgn Ratio (Ratio/3) Rgn R? (Ratio/3) F Pixels B Pixels Sum of Medians Sum of Means VALUE Log Ratio (Ratio/2) Log Ratio (Ratio/3) F635 Median - B635 F532 Median - B532 F3 Median - B3 F4 Median - B4 F635 Mean - B635 F532 Mean - B532 F3 Mean - B3 F4 Mean - B4 Flags Normalize
1 1100 26770 110 66 238 372 53 53 9 52 43 0 1669 1680 730 40 43 25 100 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.008 0.113 0.108 0.138 5.732 0.07 0.074 0 0 0 0 0 0 0 0 0 0 0 0 0 0 80 540 1642 1825 -6.969 -10000 -10000 13 1629 0 0 185 1640 0 0 0 0
2 1280 26800 150 54 137 242 52 52 9 30 21 0 45 53 30 40 42 19 16 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.4 6.538 2.736 2.339 3.622 8.492 0.266 0 0 0 0 0 0 0 0 0 0 0 0 0 0 156 955 7 98 -1.322 -10000 -10000 2 5 0 0 85 13 0 0 -50 0
3 1490 26760 110 1733 1869 512 50 70 205 100 100 0 1811 1889 743 40 60 292 100 95 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.95 0.984 0.981 1.041 1.343 0.889 0.928 0 0 0 0 0 0 0 0 0 0 0 0 0 0 80 523 3454 3668 -0.074 -10000 -10000 1683 1771 0 0 1819 1849 0 0 0 0
4 1680 26790 150 48 143 323 50 61 150 9 8 0 39 50 43 40 51 214 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 9.3 2.238 2.309 3.552 4.66 0.49 0 0 0 0 0 0 0 0 0 0 0 0 0 0 156 980 -3 103 1 -10000 -10000 -2 -1 0 0 93 10 0 0 -50 0
5 1900 26760 120 109 174 192 47 49 9 97 95 0 149 153 54 40 41 7 97 93 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.569 1.124 0.591 0.747 2.205 2.9 0.335 0 0 0 0 0 0 0 0 0 0 0 0 0 0 120 655 171 240 -0.814 -10000 -10000 62 109 0 0 127 113 0 0 0 0
6 2090 26760 110 97 170 170 48 49 9 98 85 0 128 125 36 40 41 7 100 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.557 1.435 0.625 0.785 2.407 3.069 0.493 0 0 0 0 0 0 0 0 0 0 0 0 0 0 80 514 137 207 -0.845 -10000 -10000 49 88 0 0 122 85 0 0 0 0
7 2280 26770 150 56 92 117 49 51 23 21 16 0 54 63 31 41 44 16 43 23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.538 1.955 1 0.852 3.577 1.011 0.388 0 0 0 0 0 0 0 0 0 0 0 0 0 0 156 900 20 65 -0.893 -10000 -10000 7 13 0 0 43 22 0 0 -50 0
8 2480 26760 150 51 172 358 47 50 81 15 12 0 40 62 72 40 45 82 10 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100000 5.682 2.129 2.22 3.669 5.722 0.735 0 0 0 0 0 0 0 0 0 0 0 0 0 0 156 947 4 147 16.61 -10000 -10000 4 0 0 0 125 22 0 0 -50 0
9 2700 26740 110 249 310 176 45 50 104 100 48 0 180 190 48 39 45 104 82 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1.447 1.755 1.311 1.594 1.675 0.933 0.674 0 0 0 0 0 0 0 0 0 0 0 0 0 0 80 574 345 416 0.533 -10000 -10000 204 141 0 0 265 151 0 0 0 0
10 2900 26740 120 8884 9965 5163 46 47 8 100 100 0 11056 11970 6931 40 42 8 100 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.802 0.831 0.799 0.951 1.782 0.797 0.951 0 0 0 0 0 0 0 0 0 0 0 0 0 0 120 594 19854 21849 -0.318 -10000 -10000 8838 11016 0 0 9919 11930 0 0 0 0
11 3080 26750 150 46 170 358 45 46 13 23 19 0 41 62 71 39 41 11 19 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.5 5.435 2 1.851 5.038 5.579 0.891 0 0 0 0 0 0 0 0 0 0 0 0 0 0 156 892 3 148 -1 -10000 -10000 1 2 0 0 125 23 0 0 -50 0
12 3280 26730 120 857 896 392 44 46 14 99 99 0 1178 1303 745 38 40 12 99 96 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.713 0.674 0.655 0.8 1.82 0.618 0.924 0 0 0 0 0 0 0 0 0 0 0 0 0 0 120 625 1953 2117 -0.488 -10000 -10000 813 1140 0 0 852 1265 0 0 0 0
13 3490 26710 120 101 150 162 44 45 9 94 92 0 106 106 38 38 39 7 93 91 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.838 1.559 0.964 1.115 1.925 3.456 0.515 0 0 0 0 0 0 0 0 0 0 0 0 0 0 120 620 125 174 -0.255 -10000 -10000 57 68 0 0 106 68 0 0 0 0
14 3680 26730 110 77 154 166 44 45 9 91 77 0 71 78 28 38 40 19 77 46 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2.75 1.333 1.444 2.687 4.734 0.314 0 0 0 0 0 0 0 0 0 0 0 0 0 0 80 575 66 150 0 -10000 -10000 33 33 0 0 110 40 0 0 0 0
15 3890 26710 110 331 383 152 44 49 34 100 100 0 179 194 56 37 41 25 100 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.021 2.159 1.805 2.093 1.646 2.24 0.69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 80 556 429 496 1.015 -10000 -10000 287 142 0 0 339 157 0 0 0 0
16 4080 26720 150 47 79 100 42 46 30 16 12 0 43 47 18 36 39 31 8 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.714 3.364 1.725 1.459 3.548 2.222 0.423 0 0 0 0 0 0 0 0 0 0 0 0 0 0 156 974 12 48 -0.485 -10000 -10000 5 7 0 0 37 11 0 0 -50 0
17 4290 26700 110 55 115 136 40 43 22 35 25 0 53 62 26 35 38 35 23 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.833 2.778 1.182 1.227 3.336 2.249 0.345 0 0 0 0 0 0 0 0 0 0 0 0 0 0 80 526 33 102 -0.263 -10000 -10000 15 18 0 0 75 27 0 0 -50 0
18 4480 26710 150 45 70 73 41 43 12 29 18 0 39 45 20 35 36 13 22 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2.9 1.523 1.54 3.108 4.384 0.512 0 0 0 0 0 0 0 0 0 0 0 0 0 0 156 970 8 39 0 -10000 -10000 4 4 0 0 29 10 0 0 -50 0
19 4690 26720 100 65 116 101 41 42 7 90 70 0 56 61 20 35 36 7 91 70 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1.143 2.885 1.67 1.628 2.696 5.115 0.514 0 0 0 0 0 0 0 0 0 0 0 0 0 0 80 519 45 101 0.193 -10000 -10000 24 21 0 0 75 26 0 0 -50 0
20 4890 26690 90 60 184 214 41 45 29 44 36 0 51 65 32 35 36 7 78 53 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1.188 4.767 2.5 2.079 3.463 6.476 0.811 0 0 0 0 0 0 0 0 0 0 0 0 0 0 52 400 35 173 0.248 -10000 -10000 19 16 0 0 143 30 0 0 -50 0

Total number of rows: 6400

Table truncated, full table size 1559 Kbytes.




Supplementary data files not provided
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