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Status |
Public on May 15, 2008 |
Title |
control, biological rep2 |
Sample type |
RNA |
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Source name |
control anterior mitral valve leaflet
|
Organism |
Canis lupus familiaris |
Characteristics |
control tissue, beagle cross
|
Treatment protocol |
tissue frozen in liq N2 was used
|
Extracted molecule |
total RNA |
Extraction protocol |
Qiagen RNEasy with on-column DNAse
|
Label |
biotin
|
Label protocol |
Std Affymetrix 1 cycle (ENZO)
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|
|
Hybridization protocol |
Std Affymetrix 1 cycle
|
Scan protocol |
Std Affymetrix 1 cycle
|
Description |
Gene expression data from control tissue, beagle cross
|
Data processing |
MAS5
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|
|
Submission date |
May 15, 2008 |
Last update date |
May 15, 2008 |
Contact name |
Sridar V Chittur |
E-mail(s) |
schittur@albany.edu
|
Phone |
518-591-7215
|
Organization name |
SUNY-University at Albany
|
Department |
Center for Functional Genomics
|
Lab |
Microarray Core
|
Street address |
One Discovery Drive, CRC 342G
|
City |
Rensselaer |
State/province |
NY |
ZIP/Postal code |
12144 |
Country |
USA |
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|
Platform ID |
GPL3979 |
Series (1) |
GSE11460 |
Genomic expression patterns of mitral valve tissues from dogs with degenerative mitral valve disease |
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Data table header descriptions |
ID_REF |
|
VALUE |
Signal |
ABS_CALL |
indicating whether the transcript was present (P), absent (A), or marginal (M) |
DETECTION P-VALUE |
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Data table |
ID_REF |
VALUE |
ABS_CALL |
DETECTION P-VALUE |
AFFX-BioB-5_at |
355.363 |
P |
0.000972149 |
AFFX-BioB-M_at |
348.389 |
P |
0.000753643 |
AFFX-BioB-3_at |
187.58 |
P |
0.00159257 |
AFFX-BioC-5_at |
1055.4 |
P |
0.000146581 |
AFFX-BioC-3_at |
1194.03 |
P |
4.42873e-05 |
AFFX-BioDn-5_at |
1856.55 |
P |
4.42873e-05 |
AFFX-BioDn-3_at |
5294.42 |
P |
0.000445901 |
AFFX-CreX-5_at |
11780.5 |
P |
5.16732e-05 |
AFFX-CreX-3_at |
14115 |
P |
4.42873e-05 |
AFFX-DapX-5_at |
20.3525 |
A |
0.13134 |
AFFX-DapX-M_at |
21.4818 |
A |
0.396911 |
AFFX-DapX-3_at |
7.78492 |
A |
0.814869 |
AFFX-LysX-5_at |
3.1311 |
A |
0.559354 |
AFFX-LysX-M_at |
9.06503 |
A |
0.712274 |
AFFX-LysX-3_at |
25.067 |
A |
0.227617 |
AFFX-PheX-5_at |
2.33467 |
A |
0.843268 |
AFFX-PheX-M_at |
5.37698 |
A |
0.81489 |
AFFX-PheX-3_at |
28.0896 |
A |
0.455413 |
AFFX-ThrX-5_at |
18.8003 |
A |
0.749204 |
AFFX-ThrX-M_at |
24.609 |
A |
0.262809 |
Total number of rows: 23913
Table truncated, full table size 723 Kbytes.
Supplementary file |
Size |
Download |
File type/resource |
GSM288920.CEL.gz |
2.0 Mb |
(ftp)(http) |
CEL |
GSM288920.CHP.gz |
128.8 Kb |
(ftp)(http) |
CHP |
Processed data included within Sample table |
Processed data provided as supplementary file |
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