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Sample GSM288920 Query DataSets for GSM288920
Status Public on May 15, 2008
Title control, biological rep2
Sample type RNA
 
Source name control anterior mitral valve leaflet
Organism Canis lupus familiaris
Characteristics control tissue, beagle cross
Treatment protocol tissue frozen in liq N2 was used
Extracted molecule total RNA
Extraction protocol Qiagen RNEasy with on-column DNAse
Label biotin
Label protocol Std Affymetrix 1 cycle (ENZO)
 
Hybridization protocol Std Affymetrix 1 cycle
Scan protocol Std Affymetrix 1 cycle
Description Gene expression data from control tissue, beagle cross
Data processing MAS5
 
Submission date May 15, 2008
Last update date May 15, 2008
Contact name Sridar V Chittur
E-mail(s) schittur@albany.edu
Phone 518-591-7215
Organization name SUNY-University at Albany
Department Center for Functional Genomics
Lab Microarray Core
Street address One Discovery Drive, CRC 342G
City Rensselaer
State/province NY
ZIP/Postal code 12144
Country USA
 
Platform ID GPL3979
Series (1)
GSE11460 Genomic expression patterns of mitral valve tissues from dogs with degenerative mitral valve disease

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 355.363 P 0.000972149
AFFX-BioB-M_at 348.389 P 0.000753643
AFFX-BioB-3_at 187.58 P 0.00159257
AFFX-BioC-5_at 1055.4 P 0.000146581
AFFX-BioC-3_at 1194.03 P 4.42873e-05
AFFX-BioDn-5_at 1856.55 P 4.42873e-05
AFFX-BioDn-3_at 5294.42 P 0.000445901
AFFX-CreX-5_at 11780.5 P 5.16732e-05
AFFX-CreX-3_at 14115 P 4.42873e-05
AFFX-DapX-5_at 20.3525 A 0.13134
AFFX-DapX-M_at 21.4818 A 0.396911
AFFX-DapX-3_at 7.78492 A 0.814869
AFFX-LysX-5_at 3.1311 A 0.559354
AFFX-LysX-M_at 9.06503 A 0.712274
AFFX-LysX-3_at 25.067 A 0.227617
AFFX-PheX-5_at 2.33467 A 0.843268
AFFX-PheX-M_at 5.37698 A 0.81489
AFFX-PheX-3_at 28.0896 A 0.455413
AFFX-ThrX-5_at 18.8003 A 0.749204
AFFX-ThrX-M_at 24.609 A 0.262809

Total number of rows: 23913

Table truncated, full table size 723 Kbytes.




Supplementary file Size Download File type/resource
GSM288920.CEL.gz 2.0 Mb (ftp)(http) CEL
GSM288920.CHP.gz 128.8 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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