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Sample GSM288924 Query DataSets for GSM288924
Status Public on May 15, 2008
Title diseased, biological rep2
Sample type RNA
 
Source name affected anterior mitral valve leaflet
Organism Canis lupus familiaris
Characteristics DMVD tissue, Miniature poodle
Treatment protocol tissue frozen in liq N2 was used
Extracted molecule total RNA
Extraction protocol Qiagen RNEasy with on-column DNAse
Label biotin
Label protocol Std Affymetrix 1 cycle (ENZO)
 
Hybridization protocol Std Affymetrix 1 cycle
Scan protocol Std Affymetrix 1 cycle
Description Gene expression data from DMVD tissue, Miniature poodle
Data processing MAS5
 
Submission date May 15, 2008
Last update date May 15, 2008
Contact name Sridar V Chittur
E-mail(s) schittur@albany.edu
Phone 518-591-7215
Organization name SUNY-University at Albany
Department Center for Functional Genomics
Lab Microarray Core
Street address One Discovery Drive, CRC 342G
City Rensselaer
State/province NY
ZIP/Postal code 12144
Country USA
 
Platform ID GPL3979
Series (1)
GSE11460 Genomic expression patterns of mitral valve tissues from dogs with degenerative mitral valve disease

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 638.05 P 0.00159257
AFFX-BioB-M_at 643.178 P 0.000753643
AFFX-BioB-3_at 429.617 P 0.000753643
AFFX-BioC-5_at 1936.51 P 9.4506e-05
AFFX-BioC-3_at 2036.16 P 4.42873e-05
AFFX-BioDn-5_at 3019.46 P 4.42873e-05
AFFX-BioDn-3_at 8508.07 P 0.000146581
AFFX-CreX-5_at 21433.5 P 5.16732e-05
AFFX-CreX-3_at 25827.5 P 4.42873e-05
AFFX-DapX-5_at 32.1098 P 0.023919
AFFX-DapX-M_at 27.6284 A 0.368438
AFFX-DapX-3_at 6.4436 A 0.941556
AFFX-LysX-5_at 12.6845 A 0.440641
AFFX-LysX-M_at 51.8983 A 0.51489
AFFX-LysX-3_at 34.6727 A 0.239063
AFFX-PheX-5_at 4.89855 A 0.824672
AFFX-PheX-M_at 5.51701 A 0.794268
AFFX-PheX-3_at 9.7095 A 0.891021
AFFX-ThrX-5_at 41.4607 A 0.559359
AFFX-ThrX-M_at 24.4919 A 0.440641

Total number of rows: 23913

Table truncated, full table size 722 Kbytes.




Supplementary file Size Download File type/resource
GSM288924.CEL.gz 2.0 Mb (ftp)(http) CEL
GSM288924.CHP.gz 128.1 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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