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Sample GSM28927 Query DataSets for GSM28927
Status Public on Jun 13, 2005
Title ctr9D_5
Sample type RNA
 
Channel 1
Source name OY94 (wt) @ 39 deg
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name GHY1158 (ctr9D) @ 39 deg
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description Reference and mutant strains grown at 30oC to 1-2 x 10exp7 cells/ml. shifted to 39 deg for 45 minutes. RNA extracted.
Empty cells (no data) are represented by the value -10000
 
Submission date Aug 12, 2004
Last update date Jun 13, 2005
Contact name Todd A Burckin
E-mail(s) burckin@biology.ucsc.edu
Phone 831 459-5245
Fax 831 459-3139
Organization name University of California Santa Cruz
Department Molecular, Cell, & Developmental Biology
Lab Hartzog Lab
Street address 1156 High Street
City Santa Cruz
State/province CA
ZIP/Postal code 95062
Country USA
 
Platform ID GPL1410
Series (1)
GSE1684 Exploring functional relationships between components of the gene expression machinery

Data table header descriptions
ID_REF
X X-coordinate of spot
Y Y-coordinate of spot
Dia. spot diameter in microns
F635 Median Channel 2 (Cy5/635) median pixel intensity - feature
F635 Mean Channel 2 (Cy5/635) mean pixel intensity - feature
F635 SD Channel 2 (Cy5/635) standard deviation of pixel intensities - feature
B635 Median Channel 2 (Cy5/635) median background intensity
B635 Mean Channel 2 (Cy5/635) mean background intensity
B635 SD Channel 2 (Cy5/635) standard deviation of background
% > B635+1SD Channel 2 (Cy5/635) percent of pixels 1 StDev above background
% > B635+2SD Channel 2 (Cy5/635) percent of pixels 2 StDevs above background
F635 % Sat. Channel 2 (Cy5/635) percent of pixels saturated
F532 Median Channel 1 (Cy3/532) median pixel intensity - feature
F532 Mean Channel 1 (Cy3/532) mean pixel intensity - feature
F532 SD Channel 1 (Cy3/532) standard deviation of pixel intensities - feature
B532 Median Channel 1 (Cy3/532) median background intensity
B532 Mean Channel 1 (Cy3/532) mean background intensity
B532 SD Channel 1 (Cy3/532) standard deviation of background
% > B532+1SD Channel 1 (Cy3/532) percent of pixels 1 StDev above background
% > B532+2SD Channel 1 (Cy3/532) percent of pixels 2 StDevs above background
F532 % Sat. Channel 1 (Cy3/532) percent of pixels saturated
Ratio of Medians (635/532) Ratio of medians (Ch2/Ch1)
Ratio of Means (635/532) Ratio of means (Ch2/Ch1)
Median of Ratios (635/532) Median of ratios
Mean of Ratios (635/532) Mean of ratios
Ratios SD (635/532) Ratio standard deviation
Rgn Ratio (635/532) Regression ratio
Rgn R? (635/532) Regression square ratio
F Pixels Number of feature pixels
B Pixels Number of background pixels
Sum of Medians Sum of medians
Sum of Means Sum of means
VALUE Log ratio (base 2)
F635 Median - B635 Channel 2 (Cy5/635) background subtracted median feature intensity
F532 Median - B532 Channel 1 (Cy3/532) background subtracted median feature intensity
F635 Mean - B635 Channel 2 (Cy5/635) background subtracted mean feature intensity
F532 Mean - B532 Channel 1 (Cy3/532) background subtracted mean feature intensity
F635 Total Intensity F635 Total Intensity
F532 Total Intensity F532 Total Intensity
SNR 635 n/a
SNR 532 n/a
Flags User defined flag (default=0)
Normalize n/a

Data table
ID_REF X Y Dia. F635 Median F635 Mean F635 SD B635 Median B635 Mean B635 SD % > B635+1SD % > B635+2SD F635 % Sat. F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD % > B532+1SD % > B532+2SD F532 % Sat. Ratio of Medians (635/532) Ratio of Means (635/532) Median of Ratios (635/532) Mean of Ratios (635/532) Ratios SD (635/532) Rgn Ratio (635/532) Rgn R? (635/532) F Pixels B Pixels Sum of Medians Sum of Means VALUE F635 Median - B635 F532 Median - B532 F635 Mean - B635 F532 Mean - B532 F635 Total Intensity F532 Total Intensity SNR 635 SNR 532 Flags Normalize
1 2850 13720 80 46 47 6 44 45 6 28 9 0 118 132 53 43 43 4 100 100 0 0.027 0.034 0.073 0.075 2.54 0.009 0.005 52 340 77 92 -5.211 2 75 3 89 2459 6875 0.333 22.25 0 0
2 3030 13720 90 1526 1215 555 45 45 5 100 100 0 5948 5197 1701 44 44 3 100 100 0 0.251 0.227 0.241 0.193 1.558 0.239 0.94 52 393 7385 6323 -1.994 1481 5904 1170 5153 63174 270253 234 1717.667 0 0
3 3200 13730 80 135 126 32 46 46 5 100 100 0 149 144 41 44 44 3 100 100 0 0.848 0.8 0.778 0.805 1.396 0.802 0.919 52 321 194 180 -0.238 89 105 80 100 6560 7476 16 33.333 0 0
4 3370 13720 110 52 52 9 46 46 6 47 25 0 58 58 12 45 45 4 73 57 0 0.462 0.462 0.623 0.612 2.663 0.647 0.183 80 486 19 19 -1.114 6 13 6 13 4179 4655 1 3.25 0 0
5 3550 13720 110 84 84 33 46 46 5 72 70 0 99 95 42 45 45 4 73 67 0 0.704 0.76 0.765 0.813 1.877 0.769 0.849 80 508 92 88 -0.506 38 54 38 50 6705 7599 7.6 12.5 0 0
6 3740 13730 90 73 73 11 46 46 5 98 94 0 77 75 11 45 45 4 98 96 0 0.844 0.9 0.897 0.873 1.583 0.871 0.653 52 394 59 57 -0.245 27 32 27 30 3779 3906 5.4 7.5 0 0
7 3910 13730 90 217 206 47 46 46 5 100 100 0 150 143 25 46 45 4 100 100 0 1.644 1.649 1.648 1.634 1.274 1.736 0.888 52 378 275 257 0.717 171 104 160 97 10726 7418 32 24.5 0 0
8 4080 13720 110 128 135 74 46 47 6 75 72 0 95 92 40 45 45 4 72 72 0 1.64 1.894 1.872 1.87 1.748 1.966 0.904 80 472 132 136 0.714 82 50 89 47 10835 7360 14.667 11.75 0 0
9 4250 13720 110 56 56 10 46 47 6 56 38 0 54 54 8 46 46 4 68 46 0 1.25 1.25 1.345 1.193 2.375 1.719 0.252 80 472 18 18 0.322 10 8 10 8 4462 4294 1.5 2 -50 0
10 4430 13720 110 53 54 9 47 47 6 48 23 0 58 58 11 45 46 4 73 60 0 0.462 0.538 0.667 0.675 2.488 0.813 0.226 80 509 19 20 -1.114 6 13 7 13 4283 4637 1.167 3 0 0
11 4620 13740 80 57 57 7 47 47 6 69 38 0 56 56 6 46 46 3 88 73 0 1 1 1.056 0.919 2.453 1.826 0.222 52 312 20 20 0 10 10 10 10 2989 2890 1.667 3.333 0 0
12 4780 13730 110 49 49 5 47 47 5 28 2 0 47 47 4 45 45 3 31 7 0 1 1 1.333 1.303 2.844 11.246 0.005 80 470 4 4 0 2 2 2 2 3894 3726 0.4 0.667 -50 0
13 4960 13730 80 256 240 65 47 47 6 98 98 0 215 203 44 46 46 4 100 100 0 1.237 1.229 1.255 1.135 1.563 1.263 0.937 52 334 378 350 0.307 209 169 193 157 12471 10572 32.167 39.25 0 0
14 5140 13730 80 173 169 49 46 47 6 98 98 0 320 305 72 46 46 4 100 100 0 0.464 0.475 0.462 0.434 1.501 0.483 0.895 52 326 401 382 -1.108 127 274 123 259 8797 15853 20.333 64.75 0 0
15 5320 13730 80 407 366 118 46 47 6 100 100 0 586 544 136 46 46 4 100 100 0 0.669 0.643 0.63 0.611 1.288 0.664 0.944 52 327 901 818 -0.58 361 540 320 498 19038 28284 53.167 124.5 0 0
16 5480 13740 80 588 574 142 46 47 6 100 100 0 455 447 108 46 46 4 100 100 0 1.325 1.317 1.321 1.319 1.236 1.31 0.949 52 305 951 929 0.406 542 409 528 401 29859 23262 87.833 100.25 0 0
17 5670 13740 80 198 196 41 47 48 6 100 100 0 170 161 36 47 47 10 100 100 0 1.228 1.307 1.329 1.334 1.318 1.293 0.905 52 340 274 263 0.296 151 123 149 114 10192 8362 24.667 11.4 0 0
18 5850 13740 80 192 182 36 46 47 6 100 100 0 298 271 67 46 47 10 100 100 0 0.579 0.604 0.591 0.613 1.323 0.578 0.922 52 328 398 361 -0.788 146 252 136 225 9468 14098 22.5 22.4 0 0
19 6020 13740 90 939 922 240 47 47 6 100 100 0 845 801 227 46 46 3 100 100 0 1.116 1.159 1.16 1.191 1.372 1.149 0.951 52 378 1691 1630 0.158 892 799 875 755 47941 41664 145.833 251.667 0 0
20 6200 13740 80 649 619 134 47 47 6 100 100 0 352 332 62 46 46 4 100 100 0 1.967 2 1.995 1.989 1.169 2.052 0.963 52 334 908 858 0.976 602 306 572 286 32200 17253 95.333 71.5 0 0

Total number of rows: 20000

Table truncated, full table size 3444 Kbytes.




Supplementary data files not provided

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