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Sample GSM2948768 Query DataSets for GSM2948768
Status Public on Apr 01, 2018
Title S_163
Sample type RNA
 
Source name Breast tumor
Organism Homo sapiens
Characteristics gender: Female
tissue: breast cancer tumor
tumor type: HER2 Breast Cancer
age: 61
estrogen receptor status: NO
grade: 0
Stage: II
progesterone receptor status: NO
pcr: 1
dfs.event: 0
dfs.time: 1764
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label N/A
Label protocol Not applicable
 
Hybridization protocol Not applicable
Scan protocol Not applicable
Description Gene expression data from breast tumor sample
Data processing Gene expression data from the NanoString nCounter assay were analyzed after QC filtering and normalization by using the R package NanoStringQCPro (version 0.99.8.3). As recommended, the mean of the positive probes and the housekeeping genes were used in order to account for differences in sample input. Moreover, negative control probes were used for background correction and samples that did not pass QC control were removed.
 
Submission date Jan 26, 2018
Last update date Apr 01, 2018
Contact name Yacine Bareche
E-mail(s) barechey@gmail.com
Organization name Jules Bordet Institute
Lab BCTL
Street address Rue Héger-Bordetstraat 1
City Brussel
ZIP/Postal code 1000
Country Belgium
 
Platform ID GPL24546
Series (1)
GSE109710 Tumor infiltrating lymphocytes in patients receiving trastuzumab/pertuzumab-based chemotherapy: A TRYPHAENA substudy

Data table header descriptions
ID_REF
VALUE Normalized expression

Data table
ID_REF VALUE
1 -2.44426809741386
2 -5.18677444212785
3 -2.59303388275613
4 -0.323108960136521
5 -4.63776880622033
6 -3.85976180808539
7 -3.08561126053402
8 -1.23574460926216
9 -4.26639633433219
10 -1.43575487884086
11 -1.47418093613238
12 -1.77255735304648
13 -2.35996303326785
14 -1.76335947558249
15 -3.72998421453291
16 -2.6715984829529
17 -1.98305827794363
18 -5.36685099762398
19 -0.82033358687068
20 -9.02935491444505

Total number of rows: 815

Table truncated, full table size 17 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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