|
| Status |
Public on Jun 10, 2008 |
| Title |
nivara_VS_rufipogon_B |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
nivara
|
| Organism |
Oryza sativa |
| Characteristics |
O. nivara (IRRI Accession no. 106061, India)
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Trizol/RNeasy
|
| Label |
Cy5
|
| Label protocol |
amino-allyl and monofunctional dye
|
| |
|
| Channel 2 |
| Source name |
rufipogon
|
| Organism |
Oryza sativa |
| Characteristics |
O. rufipogon (IRRI Accession no. 106161, Laos)
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Trizol/RNeasy
|
| Label |
Cy3
|
| Label protocol |
amino-allyl and monofunctional dye
|
| |
|
| |
| Hybridization protocol |
42C 50% formamide
|
| Scan protocol |
Axon GenePix 4000B
|
| Description |
comparing the expression pattern of heading-stage panicle in six rice lineages.
|
| Data processing |
The raw signal intensities were normalized by lowess normalization followed with quantile normalization.
|
| |
|
| Submission date |
Jun 09, 2008 |
| Last update date |
Jun 09, 2008 |
| Contact name |
zhiyu peng |
| Organization name |
Yale University
|
| Department |
Molecular, Cellular & Developmental Biology
|
| Lab |
Xingwang Deng
|
| Street address |
165 Prospect
|
| City |
NEW HAVEN |
| State/province |
CT |
| ZIP/Postal code |
06520 |
| Country |
USA |
| |
|
| Platform ID |
GPL1774 |
| Series (1) |
| GSE11712 |
Gene expression level of six rice lineages |
|
