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Sample GSM2983 Query DataSets for GSM2983
Status Public on Dec 06, 2002
Title M7TW01013102
Sample type RNA
 
Source name digits
Organism Mus musculus
Extracted molecule total RNA
Extraction protocol as per manufacturer's instructions
Label protocol as per manufacturer's instructions
 
Hybridization protocol as per manufacturer's instructions
Scan protocol as per manufacturer's instructions
Description Large-scale analysis of the mouse transcriptome.
Digits
C57BL/6L, M/F pool (4 males, 3 females), 8-11 weeks
Analyzed using the Affymetrix MAS4 algorithm.
Background: Avg: 252.86 Stdv: 10.61 Min: 240.37 Max: 272.63
 
Submission date Nov 22, 2002
Last update date Dec 14, 2006
Contact name John R Walker
E-mail(s) jwalker@gnf.org
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL32
Series (1)
GSE97 Large-scale analysis of the mouse transcriptome

Data table header descriptions
ID_REF Affymetrix Probe Set Identifier
Positive Number of positive probe pairs
Negative Number of negative probe pairs
Pairs Number of probe set specific probe pairs on the array
Pairs_Used Pairs used
Pairs_InAvg
Pos_Fraction Positive/Pairs_Used
Log_Avg Log average
PM_Excess Number of probe pairs where PM/MM exceeds the ratio limit (10 by default)
MM_Excess Number of probe pairs where MM/PM exceeds 1/ratio limit (10 by default)
Pos/Neg Positive/Negative
VALUE Average Difference Intensity
ABS_CALL Whether a probe set is present, marginal, or absent

Data table
ID_REF Positive Negative Pairs Pairs_Used Pairs_InAvg Pos_Fraction Log_Avg PM_Excess MM_Excess Pos/Neg VALUE ABS_CALL
100001_at 6 4 16 16 15 0.38 0.60 0 0 1.50 -344.12 A
100002_at 6 4 16 16 16 0.38 0.83 0 0 1.50 -1.39 A
100003_at 4 4 16 16 16 0.25 0.04 0 0 1.00 -132.77 A
100004_at 6 4 16 16 16 0.38 0.80 0 0 1.50 137.97 A
100005_at 7 3 16 16 15 0.44 0.94 0 0 2.33 922.07 A
100006_at 5 5 16 16 14 0.31 0.23 0 0 1.00 229.75 A
100007_at 6 0 16 16 15 0.38 1.03 0 0 Undef 667.74 P
100009_r_at 8 1 16 16 16 0.50 2.09 0 0 8.00 31.38 P
100010_at 5 0 16 16 16 0.31 1.43 0 0 Undef 535.39 A
100011_at 13 0 16 16 15 0.81 4.93 0 0 Undef 1345.14 P
100012_at 4 5 16 16 16 0.25 0.51 0 0 0.80 35.22 A
100013_at 3 5 16 16 15 0.19 -0.75 0 0 0.60 -417.70 A
100014_at 3 3 16 16 14 0.19 -0.55 0 0 1.00 -15.39 A
100015_at 8 4 16 16 14 0.50 0.29 0 0 2.00 205.27 A
100016_at 4 4 16 16 14 0.25 0.05 0 0 1.00 495.80 A
100017_at 6 2 16 16 15 0.38 2.15 0 0 3.00 713.63 P
100018_at 4 4 16 16 15 0.25 0.06 0 0 1.00 -451.11 A
100019_at 6 3 16 16 16 0.38 0.93 0 0 2.00 -223.57 A
100020_at 6 3 16 16 15 0.38 1.12 0 0 2.00 346.11 A
100021_at 3 6 16 16 15 0.19 -0.19 0 0 0.50 64.37 A

Total number of rows: 10043

Table truncated, full table size 502 Kbytes.




Supplementary file Size Download File type/resource
GSM2983.CEL.gz 3.1 Mb (ftp)(http) CEL

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