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Sample GSM3040835 Query DataSets for GSM3040835
Status Public on Jan 17, 2019
Title Whole Kidney RNA-Seq, transcriptome 02
Sample type SRA
 
Source name whole kidney
Organism Mus musculus
Characteristics strain: C57BL/6
tissue: Kidney
gender: male
age: 2 month-old
Treatment protocol Male mice were grown and maintained in the Animal Facility of the NHLBI. 2 month-old mice were used in the experiments.
Extracted molecule polyA RNA
Extraction protocol RNAs were extracted using Zymo kit and cDNAs were sythesized using SMART-Seq V4 Ultra Low Input RNA Kit.
RNA libraries were prepared for sequencing using standard Illumina protocols
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 3000
 
Description Whole_Kidney_2
Data processing Sequenced reads were mapped to Ensembl mouse gene set (GRCm38.p5) using STAR v2.5.1b
Transcript abundances in TPM were caculated by RSEM/1.2.31
GRCm38.p5 (Ensembl)
Genome_build: tab-delimited text files include TPM values for each sample
 
Submission date Mar 14, 2018
Last update date Jan 17, 2019
Contact name Lihe Chen
E-mail(s) lihe.chen@nih.gov
Phone 3015947152
Organization name NHLBI
Street address 10 center drive MSC 1603, Building 10, Room 6N318
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL21493
Series (1)
GSE111837 Representation and relative abundance of cell-type selective markers in whole-kidney RNA-Seq data
Relations
BioSample SAMN08712745
SRA SRX3790698

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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