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Sample GSM3040835 Query DataSets for GSM3040835
Status Public on Jan 17, 2019
Title Whole Kidney RNA-Seq, transcriptome 02
Sample type SRA
Source name whole kidney
Organism Mus musculus
Characteristics strain: C57BL/6
tissue: Kidney
gender: male
age: 2 month-old
Treatment protocol Male mice were grown and maintained in the Animal Facility of the NHLBI. 2 month-old mice were used in the experiments.
Extracted molecule polyA RNA
Extraction protocol RNAs were extracted using Zymo kit and cDNAs were sythesized using SMART-Seq V4 Ultra Low Input RNA Kit.
RNA libraries were prepared for sequencing using standard Illumina protocols
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 3000
Description Whole_Kidney_2
Data processing Sequenced reads were mapped to Ensembl mouse gene set (GRCm38.p5) using STAR v2.5.1b
Transcript abundances in TPM were caculated by RSEM/1.2.31
GRCm38.p5 (Ensembl)
Genome_build: tab-delimited text files include TPM values for each sample
Submission date Mar 14, 2018
Last update date Jan 17, 2019
Contact name Lihe Chen
Phone 3015947152
Organization name NHLBI
Street address 10 center drive MSC 1603, Building 10, Room 6N318
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL21493
Series (1)
GSE111837 Representation and relative abundance of cell-type selective markers in whole-kidney RNA-Seq data
BioSample SAMN08712745
SRA SRX3790698

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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