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Sample GSM307000 Query DataSets for GSM307000
Status Public on Jul 30, 2008
Title CML Patient 1 before therapy
Sample type RNA
 
Source name Peripheral Blood
Organism Homo sapiens
Characteristics CD34+ cells of CML patient before therapy
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy mini kit (Qiagen; 74106)
Label Biotin
Label protocol GeneChip Expression 3’-Amplification One-Cycle-Target Labeling & Control Reagents
(Affymetrix; 900493)
 
Hybridization protocol According to manufacturers instructions
Scan protocol According to manufacturers instructions
Description (CML) chronic myeloid leukaemia / CD34+ stem cells before Glivec therapy
Data processing MAS 5.0, Scaling Factor 500
 
Submission date Jul 22, 2008
Last update date Jul 29, 2008
Contact name Daniela Bruennert
E-mail(s) Daniela.Bruennert@med.uni-duesseldorf.de
Phone 0211/8114869
Organization name University Clinic Duesseldorf
Department Clinic for Hematology, Oncology and clin. Immunology
Lab Haematologisches Forschungslabor
Street address Universitaetsstr. 1
City Duesseldorf
ZIP/Postal code 40225
Country Germany
 
Platform ID GPL571
Series (1)
GSE12211 Gene expression of CML CD34+ cells during Imatinib therapy

Data table header descriptions
ID_REF
VALUE Expression Value
ABS_CALL Absent Call
DETECTION P-VALUE Detection p-Value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1424.59 P 5.16732e-05
AFFX-BioB-M_at 2295.01 P 4.42873e-05
AFFX-BioB-3_at 1403.98 P 6.02111e-05
AFFX-BioC-5_at 4249.86 P 4.42873e-05
AFFX-BioC-3_at 5311.83 P 4.42873e-05
AFFX-BioDn-5_at 9675.08 P 4.42873e-05
AFFX-BioDn-3_at 17898.1 P 4.42873e-05
AFFX-CreX-5_at 46976.6 P 5.16732e-05
AFFX-CreX-3_at 49003.6 P 4.42873e-05
AFFX-DapX-5_at 3.40474 A 0.824756
AFFX-DapX-M_at 22.4261 A 0.659339
AFFX-DapX-3_at 3.68017 A 0.891041
AFFX-LysX-5_at 9.93249 A 0.645596
AFFX-LysX-M_at 2.97402 A 0.996405
AFFX-LysX-3_at 2.31002 A 0.824693
AFFX-PheX-5_at 13.094 A 0.60308
AFFX-PheX-M_at 1.81234 A 0.98333
AFFX-PheX-3_at 39.32 A 0.239044
AFFX-ThrX-5_at 28.3823 A 0.300606
AFFX-ThrX-M_at 16.6858 A 0.645559

Total number of rows: 22277

Table truncated, full table size 672 Kbytes.




Supplementary file Size Download File type/resource
GSM307000.CEL.gz 1.8 Mb (ftp)(http) CEL
GSM307000.CHP.gz 123.5 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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