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Sample GSM307028 Query DataSets for GSM307028
Status Public on Jul 30, 2008
Title CML Patient 1 7 days therapy
Sample type RNA
 
Source name Peripheral Blood
Organism Homo sapiens
Characteristics CD34+ cells of CML patient after 7 days of Glivec therapy
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy mini kit (Qiagen; 74106)
Label Biotin
Label protocol GeneChip Expression 3’-Amplification One-Cycle-Target Labeling & Control Reagents
(Affymetrix; 900493)
 
Hybridization protocol According to manufacturers instructions
Scan protocol According to manufacturers instructions
Description (CML) chronic myeloid leukaemia / CD34+ stem cells after 7 days of Glivec therapy
Data processing MAS 5.0, Scaling Factor 500
 
Submission date Jul 22, 2008
Last update date Jul 29, 2008
Contact name Daniela Bruennert
E-mail(s) Daniela.Bruennert@med.uni-duesseldorf.de
Phone 0211/8114869
Organization name University Clinic Duesseldorf
Department Clinic for Hematology, Oncology and clin. Immunology
Lab Haematologisches Forschungslabor
Street address Universitaetsstr. 1
City Duesseldorf
ZIP/Postal code 40225
Country Germany
 
Platform ID GPL571
Series (1)
GSE12211 Gene expression of CML CD34+ cells during Imatinib therapy

Data table header descriptions
ID_REF
VALUE Expression Value
ABS_CALL Absent Call
DETECTION P-VALUE Detection p-Value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 2345.91 P 5.16732e-05
AFFX-BioB-M_at 4237.7 P 4.42873e-05
AFFX-BioB-3_at 2213.09 P 4.42873e-05
AFFX-BioC-5_at 6182.99 P 5.16732e-05
AFFX-BioC-3_at 8712.12 P 4.42873e-05
AFFX-BioDn-5_at 16399 P 4.42873e-05
AFFX-BioDn-3_at 28030.4 P 4.42873e-05
AFFX-CreX-5_at 72045 P 5.16732e-05
AFFX-CreX-3_at 75949.6 P 4.42873e-05
AFFX-DapX-5_at 2.71499 A 0.937087
AFFX-DapX-M_at 43.5971 A 0.440646
AFFX-DapX-3_at 2.04592 A 0.976071
AFFX-LysX-5_at 31.9931 A 0.175328
AFFX-LysX-M_at 24.1806 A 0.659339
AFFX-LysX-3_at 23.1377 A 0.455413
AFFX-PheX-5_at 3.49142 A 0.883908
AFFX-PheX-M_at 7.03301 A 0.712257
AFFX-PheX-3_at 12.5347 A 0.672921
AFFX-ThrX-5_at 8.69467 A 0.686277
AFFX-ThrX-M_at 26.2809 A 0.51489

Total number of rows: 22277

Table truncated, full table size 671 Kbytes.




Supplementary file Size Download File type/resource
GSM307028.CEL.gz 1.8 Mb (ftp)(http) CEL
GSM307028.CHP.gz 123.2 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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