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Sample GSM30747 Query DataSets for GSM30747
Status Public on Sep 21, 2004
Title ENCODE: TAF1-HCT116 Rep2
Sample type genomic
 
Channel 1
Source name Chromatin immunoprecipitated DNA using TAF1 antibody
Organism Homo sapiens
Extracted molecule genomic DNA
 
Channel 2
Source name input DNA
Organism Homo sapiens
Extracted molecule genomic DNA
 
 
Description Genome-wide location analysis of TAF1 binding at ENCODE regions in HCT116 cells. Replicate 2 of 3.
 
Submission date Sep 17, 2004
Last update date Nov 22, 2005
Contact name Chunxu Qu
E-mail(s) qchunxu@ucsd.edu
Phone (858)822-5767
Organization name Ludwig Institute for Cancer Research
Department Gene Regulation
Lab RenLab
Street address
City San Diego
State/province CA
ZIP/Postal code 92093
Country USA
 
Platform ID GPL1454
Series (1)
GSE1778 ENCODE: GWLA of TAF1, RNA PolII binding in four cell lines

Data table header descriptions
ID_REF
VALUE same as UNF_VALUE but with flagged values removed
SIGNIFICANCE significance
P-VAL p-value calculated using single array error model
F635_INT F635 intensity with background intensity subtracted
F532_INT F532 intensity with background intensity subtracted
F635_MEDIAN F635 mdian intensity
F635_MEAN F635 man intensity
F635_SD F635 standard deviation
B635_MEDIAN B635 median intensity
B635_MEAN B635 mean intensity
B635_SD B635 standard deviation
F532_MEDIAN F532 mdian intensity
F532_MEAN F532 man intensity
F532_SD F532 standard deviation
B532_MEDIAN B532 median intensity
B532_MEAN B532 mean intensity
B532_SD B532 standard deviation
FLAG flag from GenePro, 0 is useful
PRE_VALUE enrichment value (F635/F532)
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE SIGNIFICANCE P-VAL F635_INT F532_INT F635_MEDIAN F635_MEAN F635_SD B635_MEDIAN B635_MEAN B635_SD F532_MEDIAN F532_MEAN F532_SD B532_MEDIAN B532_MEAN B532_SD FLAG PRE_VALUE UNF_VALUE
1 0.4005383 0.1453 0.118740 441.5 335.28 516 576 282 75 381 3662 403 410 110 145 422 3741 0 1.32 0.4005383
2 0.2868813 0.1081 0.189804 520.5 425.04 583 627 325 63 89 91 463 469 155 137 147 198 0 1.22 0.2868813
3 0.0840643 0.0321 0.397101 1004.5 949.08 1071 1077 407 67 94 96 860 861 258 137 153 206 0 1.06 0.0840643
4 0.0840643 0.0059 0.480796 447.5 421.08 515 690 821 68 107 215 466 1624 4321 143 194 918 0 1.06 0.0840643
5 0.2509623 0.0976 0.213798 657.5 551.76 722 737 309 65 90 76 554 553 132 132 136 40 0 1.19 0.2509623
6 0.2630343 0.0980 0.212947 577.5 483.12 646 676 302 69 101 207 504 517 144 134 181 921 0 1.20 0.2630343
7 0.4329593 0.1605 0.095992 332.5 245.52 397 422 201 65 244 2205 321 316 85 131 394 3577 0 1.35 0.4329593
8 -0.5353323 -0.2052 0.952305 511.5 744.48 576 613 281 65 87 74 702 687 189 134 137 40 0 0.69 -0.5353323
9 -0.5145733 -0.1801 0.928424 168.5 240.24 236 263 165 68 92 90 322 333 86 136 139 42 0 0.70 -0.5145733
10 0.2016343 0.0641 0.301248 133.5 116.16 198 233 152 65 88 75 229 223 71 137 142 52 0 1.15 0.2016343
11 -0.2515393 -0.0915 0.771480 245.5 291.72 312 337 186 67 90 78 362 376 106 137 141 43 0 0.84 -0.2515393
12 -0.3400753 -0.1305 0.855570 702.5 884.40 765 767 294 63 87 76 813 816 141 139 141 42 0 0.79 -0.3400753
13 -0.2009133 -0.0766 0.733361 471.5 541.20 538 572 261 67 92 83 552 566 130 138 141 43 0 0.87 -0.2009133
14 0.2141253 0.0796 0.258929 544.5 471.24 608 609 278 64 91 80 495 507 155 134 139 46 0 1.16 0.2141253
15 0.8559903 0.2986 0.007612 504.5 278.52 567 583 295 63 88 76 354 353 87 139 143 45 0 1.81 0.8559903
16 0.3103403 0.1209 0.162949 489.5 393.36 556 584 233 67 90 77 443 438 103 141 144 43 0 1.24 0.3103403
17 -0.2344653 -0.0917 0.771974 431.5 509.52 499 539 245 68 90 76 531 532 148 141 142 43 0 0.85 -0.2344653
18 0.7048723 0.2508 0.020751 312.5 191.40 374 397 180 62 88 78 285 295 86 136 140 42 0 1.63 0.7048723
19 0.2509623 0.0990 0.210418 1205.5 1009.80 1266 1302 511 61 87 77 905 860 288 136 138 42 0 1.19 0.2509623
20 0.4541763 0.1723 0.080728 780.5 571.56 841 867 327 61 87 77 577 581 129 140 143 42 0 1.37 0.4541763

Total number of rows: 25392

Table truncated, full table size 2639 Kbytes.




Supplementary file Size Download File type/resource
GSM30747_cy3.tif.gz 53.4 Mb (ftp)(http) TIFF
GSM30747_cy5.tif.gz 55.0 Mb (ftp)(http) TIFF

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