|
Status |
Public on Apr 04, 2018 |
Title |
brass_med_post_3 |
Sample type |
SRA |
|
|
Source name |
Medial nectary post-secretory
|
Organism |
Brassica juncea |
Characteristics |
tissue: Nectary
|
Extracted molecule |
total RNA |
Extraction protocol |
Illumina’s Truseq RNA Preparation v2 kit (RS-122-2001)
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 2500 |
|
|
Description |
Medial nectary post-secretory replicate 3
|
Data processing |
Contigs assembled with Trinity v.2.3 Reads aligned to contigs using NCBI blastn Contigs matched to closest Brassica rapa and Arabidopsis thaliana mRNA sequences Genome_build: Brassica rapa from NCBI, downloaded 6/9/2016; Arabidopsis thaliana from Araport 11 build 201606 Supplementary_files_format_and_content: Brassica_juncea_to_Brassica_rapa.xls, a spreadsheet with mapped normalized counts
|
|
|
Submission date |
Apr 04, 2018 |
Last update date |
Apr 05, 2018 |
Contact name |
Marshall Hampton |
Organization name |
University of Minnesota Duluth
|
Street address |
1117 University Drive
|
City |
Duluth |
State/province |
MN |
ZIP/Postal code |
55812 |
Country |
USA |
|
|
Platform ID |
GPL24838 |
Series (1) |
GSE112675 |
Transcriptome of Brassica juncea nectaries and leaves |
|
Relations |
BioSample |
SAMN08863519 |
SRA |
SRX3882747 |