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Sample GSM3076192 Query DataSets for GSM3076192
Status Public on Apr 04, 2018
Title brass_med_post_3
Sample type SRA
 
Source name Medial nectary post-secretory
Organism Brassica juncea
Characteristics tissue: Nectary
Extracted molecule total RNA
Extraction protocol Illumina’s Truseq RNA Preparation v2 kit (RS-122-2001)
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2500
 
Description Medial nectary post-secretory replicate 3
Data processing Contigs assembled with Trinity v.2.3
Reads aligned to contigs using NCBI blastn
Contigs matched to closest Brassica rapa and Arabidopsis thaliana mRNA sequences
Genome_build: Brassica rapa from NCBI, downloaded 6/9/2016; Arabidopsis thaliana from Araport 11 build 201606
Supplementary_files_format_and_content: Brassica_juncea_to_Brassica_rapa.xls, a spreadsheet with mapped normalized counts
 
Submission date Apr 04, 2018
Last update date Apr 05, 2018
Contact name Marshall Hampton
Organization name University of Minnesota Duluth
Street address 1117 University Drive
City Duluth
State/province MN
ZIP/Postal code 55812
Country USA
 
Platform ID GPL24838
Series (1)
GSE112675 Transcriptome of Brassica juncea nectaries and leaves
Relations
BioSample SAMN08863519
SRA SRX3882747

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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