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GEO accession:
Sample GSM30763
Query DataSets for GSM30763
Status
Public on Sep 21, 2004
Title
ENCODE: TAF1-HeLa Rep2
Sample type
genomic
Channel 1
Source name
Chromatin immunoprecipitated DNA using TAF1 antibody
Organism
Homo sapiens
Extracted molecule
genomic DNA
Channel 2
Source name
input DNA
Organism
Homo sapiens
Extracted molecule
genomic DNA
Description
Genome-wide location analysis of TAF1 binding at ENCODE regions in HeLa cells. Replicate 2 of 3.
Submission date
Sep 17, 2004
Last update date
Nov 22, 2005
Contact name
Chunxu Qu
E-mail(s)
qchunxu@ucsd.edu
Phone
(858)822-5767
Organization name
Ludwig Institute for Cancer Research
Department
Gene Regulation
Lab
RenLab
Street address
City
San Diego
State/province
CA
ZIP/Postal code
92093
Country
USA
Platform ID
GPL1454
Series (1)
GSE1778
ENCODE: GWLA of TAF1, RNA PolII binding in four cell lines
Data table header descriptions
ID_REF
VALUE
same as UNF_VALUE but with flagged values removed
SIGNIFICANCE
significance
P-VAL
p-value calculated using single array error model
F635_INT
F635 intensity with background intensity subtracted
F532_INT
F532 intensity with background intensity subtracted
F635_MEDIAN
F635 mdian intensity
F635_MEAN
F635 mean intensity
F635_SD
F635 standard deviation
B635_MEDIAN
B635 median intensity
B635_MEAN
B635 mean intensity
B635_SD
B635 standard deviation
F532_MEDIAN
F532 median intensity
F532_MEAN
F532 mean intensity
F532_SD
F532 standard deviation
B532_MEDIAN
B532 median intensity
B532_MEAN
B532 mean intensity
B532_SD
B532 standard deviation
FLAG
flag from GenePro, 0 is useful
PRE_VALUE
enrichment value (F635/F532)
UNF_VALUE
log ratio (log2 of PRE_VALUE)
Data table
ID_REF
VALUE
SIGNIFICANCE
P-VAL
F635_INT
F532_INT
F635_MEDIAN
F635_MEAN
F635_SD
B635_MEDIAN
B635_MEAN
B635_SD
F532_MEDIAN
F532_MEAN
F532_SD
B532_MEDIAN
B532_MEAN
B532_SD
FLAG
PRE_VALUE
UNF_VALUE
1
0.3561443
0.1401
0.161532
1129
879.14
1203
1223
434
74
92
101
751
773
204
166
170
53
0
1.28
0.3561443
2
0.2630343
0.1030
0.233742
1415
1178.75
1480
1481
538
65
83
68
945
944
288
162
167
49
0
1.20
0.2630343
3
0.0840643
0.0343
0.404408
2604
2454.33
2673
2754
644
69
91
129
1789
1793
412
163
172
92
0
1.06
0.0840643
4
0.2509623
0.1010
0.238158
1537
1287.69
1608
1618
485
71
85
64
1019
1037
258
164
168
49
0
1.19
0.2509623
5
0.2016343
0.0820
0.281594
1610
1395.13
1682
1697
495
72
88
70
1088
1093
296
162
167
51
0
1.15
0.2016343
6
0.3334243
0.1324
0.175255
1410
1115.19
1482
1512
490
72
88
67
903
934
252
162
165
52
0
1.26
0.3334243
7
0.2509623
0.0944
0.252768
679
571.97
751
782
343
72
86
64
545
550
179
163
165
50
0
1.19
0.2509623
8
0.1763233
0.0708
0.308764
1547
1367.89
1616
1646
452
69
84
63
1068
1056
226
160
161
47
0
1.13
0.1763233
9
-0.0291463
-0.0142
0.539946
893
915.46
962
949
314
69
87
67
770
807
197
161
165
52
0
0.98
-0.0291463
10
0.4329593
0.1580
0.132598
365
270.85
438
450
216
73
89
64
338
347
104
155
157
46
0
1.35
0.4329593
11
0.0840643
0.0314
0.412486
1192
1128.81
1266
1287
372
74
89
65
907
922
198
157
160
46
0
1.06
0.0840643
12
-0.0145003
-0.0083
0.523316
2363
2396.83
2435
2460
503
72
88
66
1748
1753
278
160
163
48
0
0.99
-0.0145003
13
-0.1844253
-0.0741
0.699224
1631
1855.13
1701
1699
496
70
86
66
1391
1361
356
161
164
60
0
0.88
-0.1844253
14
0.2265093
0.0883
0.266831
1095
935.13
1165
1211
477
70
86
66
780
803
258
158
163
63
0
1.17
0.2265093
15
0.2509623
0.0996
0.241196
935
783.81
1005
1008
350
70
86
65
682
683
192
160
164
51
0
1.19
0.2509623
16
0.2509623
0.1006
0.239084
1099
921.51
1172
1186
347
73
89
66
775
785
176
162
165
48
0
1.19
0.2509623
17
-0.1520033
-0.0608
0.665815
1219
1354.27
1292
1309
339
73
90
72
1060
1042
248
161
166
52
0
0.90
-0.1520033
18
0.3219283
0.1241
0.190817
605
482.70
677
712
292
72
86
64
483
504
154
160
164
47
0
1.25
0.3219283
19
0.2750073
0.1068
0.225659
2905
2410.45
2975
2941
836
70
89
68
1754
1732
463
157
161
48
0
1.21
0.2750073
20
0.1634993
0.0672
0.317768
1649
1467.76
1720
1699
444
71
88
65
1132
1111
235
158
162
47
0
1.12
0.1634993
Total number of rows:
25392
Table truncated, full table size
2648 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM30763_cy3.tif.gz
57.5 Mb
(ftp)
(http)
TIFF
GSM30763_cy5.tif.gz
57.7 Mb
(ftp)
(http)
TIFF
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