NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM30763 Query DataSets for GSM30763
Status Public on Sep 21, 2004
Title ENCODE: TAF1-HeLa Rep2
Sample type genomic
 
Channel 1
Source name Chromatin immunoprecipitated DNA using TAF1 antibody
Organism Homo sapiens
Extracted molecule genomic DNA
 
Channel 2
Source name input DNA
Organism Homo sapiens
Extracted molecule genomic DNA
 
 
Description Genome-wide location analysis of TAF1 binding at ENCODE regions in HeLa cells. Replicate 2 of 3.
 
Submission date Sep 17, 2004
Last update date Nov 22, 2005
Contact name Chunxu Qu
E-mail(s) qchunxu@ucsd.edu
Phone (858)822-5767
Organization name Ludwig Institute for Cancer Research
Department Gene Regulation
Lab RenLab
Street address
City San Diego
State/province CA
ZIP/Postal code 92093
Country USA
 
Platform ID GPL1454
Series (1)
GSE1778 ENCODE: GWLA of TAF1, RNA PolII binding in four cell lines

Data table header descriptions
ID_REF
VALUE same as UNF_VALUE but with flagged values removed
SIGNIFICANCE significance
P-VAL p-value calculated using single array error model
F635_INT F635 intensity with background intensity subtracted
F532_INT F532 intensity with background intensity subtracted
F635_MEDIAN F635 mdian intensity
F635_MEAN F635 mean intensity
F635_SD F635 standard deviation
B635_MEDIAN B635 median intensity
B635_MEAN B635 mean intensity
B635_SD B635 standard deviation
F532_MEDIAN F532 median intensity
F532_MEAN F532 mean intensity
F532_SD F532 standard deviation
B532_MEDIAN B532 median intensity
B532_MEAN B532 mean intensity
B532_SD B532 standard deviation
FLAG flag from GenePro, 0 is useful
PRE_VALUE enrichment value (F635/F532)
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE SIGNIFICANCE P-VAL F635_INT F532_INT F635_MEDIAN F635_MEAN F635_SD B635_MEDIAN B635_MEAN B635_SD F532_MEDIAN F532_MEAN F532_SD B532_MEDIAN B532_MEAN B532_SD FLAG PRE_VALUE UNF_VALUE
1 0.3561443 0.1401 0.161532 1129 879.14 1203 1223 434 74 92 101 751 773 204 166 170 53 0 1.28 0.3561443
2 0.2630343 0.1030 0.233742 1415 1178.75 1480 1481 538 65 83 68 945 944 288 162 167 49 0 1.20 0.2630343
3 0.0840643 0.0343 0.404408 2604 2454.33 2673 2754 644 69 91 129 1789 1793 412 163 172 92 0 1.06 0.0840643
4 0.2509623 0.1010 0.238158 1537 1287.69 1608 1618 485 71 85 64 1019 1037 258 164 168 49 0 1.19 0.2509623
5 0.2016343 0.0820 0.281594 1610 1395.13 1682 1697 495 72 88 70 1088 1093 296 162 167 51 0 1.15 0.2016343
6 0.3334243 0.1324 0.175255 1410 1115.19 1482 1512 490 72 88 67 903 934 252 162 165 52 0 1.26 0.3334243
7 0.2509623 0.0944 0.252768 679 571.97 751 782 343 72 86 64 545 550 179 163 165 50 0 1.19 0.2509623
8 0.1763233 0.0708 0.308764 1547 1367.89 1616 1646 452 69 84 63 1068 1056 226 160 161 47 0 1.13 0.1763233
9 -0.0291463 -0.0142 0.539946 893 915.46 962 949 314 69 87 67 770 807 197 161 165 52 0 0.98 -0.0291463
10 0.4329593 0.1580 0.132598 365 270.85 438 450 216 73 89 64 338 347 104 155 157 46 0 1.35 0.4329593
11 0.0840643 0.0314 0.412486 1192 1128.81 1266 1287 372 74 89 65 907 922 198 157 160 46 0 1.06 0.0840643
12 -0.0145003 -0.0083 0.523316 2363 2396.83 2435 2460 503 72 88 66 1748 1753 278 160 163 48 0 0.99 -0.0145003
13 -0.1844253 -0.0741 0.699224 1631 1855.13 1701 1699 496 70 86 66 1391 1361 356 161 164 60 0 0.88 -0.1844253
14 0.2265093 0.0883 0.266831 1095 935.13 1165 1211 477 70 86 66 780 803 258 158 163 63 0 1.17 0.2265093
15 0.2509623 0.0996 0.241196 935 783.81 1005 1008 350 70 86 65 682 683 192 160 164 51 0 1.19 0.2509623
16 0.2509623 0.1006 0.239084 1099 921.51 1172 1186 347 73 89 66 775 785 176 162 165 48 0 1.19 0.2509623
17 -0.1520033 -0.0608 0.665815 1219 1354.27 1292 1309 339 73 90 72 1060 1042 248 161 166 52 0 0.90 -0.1520033
18 0.3219283 0.1241 0.190817 605 482.70 677 712 292 72 86 64 483 504 154 160 164 47 0 1.25 0.3219283
19 0.2750073 0.1068 0.225659 2905 2410.45 2975 2941 836 70 89 68 1754 1732 463 157 161 48 0 1.21 0.2750073
20 0.1634993 0.0672 0.317768 1649 1467.76 1720 1699 444 71 88 65 1132 1111 235 158 162 47 0 1.12 0.1634993

Total number of rows: 25392

Table truncated, full table size 2648 Kbytes.




Supplementary file Size Download File type/resource
GSM30763_cy3.tif.gz 57.5 Mb (ftp)(http) TIFF
GSM30763_cy5.tif.gz 57.7 Mb (ftp)(http) TIFF

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap