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Sample GSM30770 Query DataSets for GSM30770
Status Public on Sep 21, 2004
Title ENCODE: TAF1-THP1 Rep3
Sample type genomic
 
Channel 1
Source name Chromatin immunoprecipitated DNA using TAF1 antibody
Organism Homo sapiens
Extracted molecule genomic DNA
 
Channel 2
Source name input DNA
Organism Homo sapiens
Extracted molecule genomic DNA
 
 
Description Genome-wide location analysis of TAF1 binding at ENCODE regions in THP1 cells. Replicate 3 of 3.
 
Submission date Sep 17, 2004
Last update date Nov 22, 2005
Contact name Chunxu Qu
E-mail(s) qchunxu@ucsd.edu
Phone (858)822-5767
Organization name Ludwig Institute for Cancer Research
Department Gene Regulation
Lab RenLab
Street address
City San Diego
State/province CA
ZIP/Postal code 92093
Country USA
 
Platform ID GPL1454
Series (1)
GSE1778 ENCODE: GWLA of TAF1, RNA PolII binding in four cell lines

Data table header descriptions
ID_REF
VALUE same as UNF_VALUE but with flagged values removed
SIGNIFICANCE significance
P-VAL p-value calculated using single array error model
F635_INT F635 intensity with background intensity subtracted
F532_INT F532 intensity with background intensity subtracted
F635_MEDIAN F635 mdian intensity
F635_MEAN F635 mean intensity
F635_SD F635 standard deviation
B635_MEDIAN B635 median intensity
B635_MEAN B635 mean intensity
B635_SD B635 standard deviation
F532_MEDIAN F532 median intensity
F532_MEAN F532 mean intensity
F532_SD F532 standard deviation
B532_MEDIAN B532 median intensity
B532_MEAN B532 mean intensity
B532_SD B532 standard deviation
FLAG flag from GenePro, 0 is useful
PRE_VALUE enrichment value (F635/F532)
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE SIGNIFICANCE P-VAL F635_INT F532_INT F635_MEDIAN F635_MEAN F635_SD B635_MEDIAN B635_MEAN B635_SD F532_MEDIAN F532_MEAN F532_SD B532_MEDIAN B532_MEAN B532_SD FLAG PRE_VALUE UNF_VALUE
1 0.5849633 0.2200 0.011667 1351.5 901.43 1436 1460 560 82 108 93 897 902 266 220 226 66 0 1.50 0.5849633
2 0.6507653 0.2341 0.007905 1542.5 981.80 1632 1725 824 87 112 94 963 1017 493 226 232 69 0 1.57 0.6507653
3 0.6040713 0.2332 0.008110 3814.5 2507.41 3908 3875 1037 91 136 227 2113 2100 578 237 252 133 0 1.52 0.6040713
4 0.5753123 0.2208 0.011406 2099.5 1407.74 2196 2243 710 94 118 106 1297 1323 326 242 246 69 0 1.49 0.5753123
5 0.6599253 0.2467 0.005491 2030.5 1288.53 2119 2176 699 86 112 93 1198 1236 477 232 236 65 0 1.58 0.6599253
6 0.6599253 0.2461 0.005595 1791.5 1133.15 1877 1905 751 83 107 90 1070 1097 350 220 224 64 0 1.58 0.6599253
7 0.6959943 0.2508 0.004869 1086.5 671.05 1175 1268 588 86 109 93 718 736 225 213 219 65 0 1.62 0.6959943
8 0.0703893 0.0256 0.395898 1549.5 1481.41 1637 1695 563 85 108 90 1322 1274 369 212 216 60 0 1.05 0.0703893
9 0.1243283 0.0483 0.309326 995.5 913.49 1083 1148 450 85 109 93 894 897 231 208 212 62 0 1.09 0.1243283
10 0.7570233 0.2626 0.003396 494.5 291.99 583 594 317 86 111 93 428 445 139 206 210 68 0 1.69 0.7570233
11 0.3334243 0.1297 0.090561 1341.5 1064.84 1425 1478 521 81 108 90 1006 1023 228 207 211 62 0 1.26 0.3334243
12 -0.0291463 -0.0140 0.557515 2137.5 2189.96 2221 2254 636 81 108 91 1854 1862 288 215 218 63 0 0.98 -0.0291463
13 0.0703893 0.0297 0.379833 1647.5 1564.45 1731 1728 530 81 107 90 1389 1391 343 217 220 62 0 1.05 0.0703893
14 0.6599253 0.2444 0.005886 1710.5 1083.60 1794 1818 741 81 110 96 1027 1047 359 214 216 61 0 1.58 0.6599253
15 0.6690273 0.2490 0.005137 1225.5 768.83 1315 1360 531 87 114 106 795 802 262 217 223 68 0 1.59 0.6690273
16 0.4005383 0.1534 0.056913 1337.5 1016.62 1427 1469 500 87 113 94 985 973 248 222 226 66 0 1.32 0.4005383
17 0.2387873 0.0959 0.161355 1394.5 1177.36 1483 1480 490 86 110 91 1106 1098 295 223 225 63 0 1.18 0.2387873
18 0.5360533 0.1930 0.023312 709.5 488.89 790 851 439 78 105 91 586 608 211 217 220 63 0 1.45 0.5360533
19 0.3785123 0.1487 0.062680 3699.5 2852.98 3780 3817 820 78 106 95 2347 2263 561 213 216 71 0 1.30 0.3785123
20 0.4114263 0.1620 0.047499 1986.5 1490.78 2073 2041 582 84 108 90 1332 1302 382 215 221 63 0 1.33 0.4114263

Total number of rows: 25392

Table truncated, full table size 2755 Kbytes.




Supplementary file Size Download File type/resource
GSM30770_cy3.tif.gz 61.4 Mb (ftp)(http) TIFF
GSM30770_cy5.tif.gz 59.3 Mb (ftp)(http) TIFF

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