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GEO accession:
Sample GSM30770
Query DataSets for GSM30770
Status
Public on Sep 21, 2004
Title
ENCODE: TAF1-THP1 Rep3
Sample type
genomic
Channel 1
Source name
Chromatin immunoprecipitated DNA using TAF1 antibody
Organism
Homo sapiens
Extracted molecule
genomic DNA
Channel 2
Source name
input DNA
Organism
Homo sapiens
Extracted molecule
genomic DNA
Description
Genome-wide location analysis of TAF1 binding at ENCODE regions in THP1 cells. Replicate 3 of 3.
Submission date
Sep 17, 2004
Last update date
Nov 22, 2005
Contact name
Chunxu Qu
E-mail(s)
qchunxu@ucsd.edu
Phone
(858)822-5767
Organization name
Ludwig Institute for Cancer Research
Department
Gene Regulation
Lab
RenLab
Street address
City
San Diego
State/province
CA
ZIP/Postal code
92093
Country
USA
Platform ID
GPL1454
Series (1)
GSE1778
ENCODE: GWLA of TAF1, RNA PolII binding in four cell lines
Data table header descriptions
ID_REF
VALUE
same as UNF_VALUE but with flagged values removed
SIGNIFICANCE
significance
P-VAL
p-value calculated using single array error model
F635_INT
F635 intensity with background intensity subtracted
F532_INT
F532 intensity with background intensity subtracted
F635_MEDIAN
F635 mdian intensity
F635_MEAN
F635 mean intensity
F635_SD
F635 standard deviation
B635_MEDIAN
B635 median intensity
B635_MEAN
B635 mean intensity
B635_SD
B635 standard deviation
F532_MEDIAN
F532 median intensity
F532_MEAN
F532 mean intensity
F532_SD
F532 standard deviation
B532_MEDIAN
B532 median intensity
B532_MEAN
B532 mean intensity
B532_SD
B532 standard deviation
FLAG
flag from GenePro, 0 is useful
PRE_VALUE
enrichment value (F635/F532)
UNF_VALUE
log ratio (log2 of PRE_VALUE)
Data table
ID_REF
VALUE
SIGNIFICANCE
P-VAL
F635_INT
F532_INT
F635_MEDIAN
F635_MEAN
F635_SD
B635_MEDIAN
B635_MEAN
B635_SD
F532_MEDIAN
F532_MEAN
F532_SD
B532_MEDIAN
B532_MEAN
B532_SD
FLAG
PRE_VALUE
UNF_VALUE
1
0.5849633
0.2200
0.011667
1351.5
901.43
1436
1460
560
82
108
93
897
902
266
220
226
66
0
1.50
0.5849633
2
0.6507653
0.2341
0.007905
1542.5
981.80
1632
1725
824
87
112
94
963
1017
493
226
232
69
0
1.57
0.6507653
3
0.6040713
0.2332
0.008110
3814.5
2507.41
3908
3875
1037
91
136
227
2113
2100
578
237
252
133
0
1.52
0.6040713
4
0.5753123
0.2208
0.011406
2099.5
1407.74
2196
2243
710
94
118
106
1297
1323
326
242
246
69
0
1.49
0.5753123
5
0.6599253
0.2467
0.005491
2030.5
1288.53
2119
2176
699
86
112
93
1198
1236
477
232
236
65
0
1.58
0.6599253
6
0.6599253
0.2461
0.005595
1791.5
1133.15
1877
1905
751
83
107
90
1070
1097
350
220
224
64
0
1.58
0.6599253
7
0.6959943
0.2508
0.004869
1086.5
671.05
1175
1268
588
86
109
93
718
736
225
213
219
65
0
1.62
0.6959943
8
0.0703893
0.0256
0.395898
1549.5
1481.41
1637
1695
563
85
108
90
1322
1274
369
212
216
60
0
1.05
0.0703893
9
0.1243283
0.0483
0.309326
995.5
913.49
1083
1148
450
85
109
93
894
897
231
208
212
62
0
1.09
0.1243283
10
0.7570233
0.2626
0.003396
494.5
291.99
583
594
317
86
111
93
428
445
139
206
210
68
0
1.69
0.7570233
11
0.3334243
0.1297
0.090561
1341.5
1064.84
1425
1478
521
81
108
90
1006
1023
228
207
211
62
0
1.26
0.3334243
12
-0.0291463
-0.0140
0.557515
2137.5
2189.96
2221
2254
636
81
108
91
1854
1862
288
215
218
63
0
0.98
-0.0291463
13
0.0703893
0.0297
0.379833
1647.5
1564.45
1731
1728
530
81
107
90
1389
1391
343
217
220
62
0
1.05
0.0703893
14
0.6599253
0.2444
0.005886
1710.5
1083.60
1794
1818
741
81
110
96
1027
1047
359
214
216
61
0
1.58
0.6599253
15
0.6690273
0.2490
0.005137
1225.5
768.83
1315
1360
531
87
114
106
795
802
262
217
223
68
0
1.59
0.6690273
16
0.4005383
0.1534
0.056913
1337.5
1016.62
1427
1469
500
87
113
94
985
973
248
222
226
66
0
1.32
0.4005383
17
0.2387873
0.0959
0.161355
1394.5
1177.36
1483
1480
490
86
110
91
1106
1098
295
223
225
63
0
1.18
0.2387873
18
0.5360533
0.1930
0.023312
709.5
488.89
790
851
439
78
105
91
586
608
211
217
220
63
0
1.45
0.5360533
19
0.3785123
0.1487
0.062680
3699.5
2852.98
3780
3817
820
78
106
95
2347
2263
561
213
216
71
0
1.30
0.3785123
20
0.4114263
0.1620
0.047499
1986.5
1490.78
2073
2041
582
84
108
90
1332
1302
382
215
221
63
0
1.33
0.4114263
Total number of rows:
25392
Table truncated, full table size
2755 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM30770_cy3.tif.gz
61.4 Mb
(ftp)
(http)
TIFF
GSM30770_cy5.tif.gz
59.3 Mb
(ftp)
(http)
TIFF
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