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Sample GSM30978 Query DataSets for GSM30978
Status Public on Sep 30, 2004
Title DA#160 U34B
Sample type RNA
 
Source name Heart, Left Ventricle
Organism Rattus norvegicus
Extracted molecule total RNA
 
Description RNA was extracted from the left ventricle of the heart, taken from a single 15 week old inbred rat that was maintained under specific pathogen free conditions. Target cRNA was prepared using the Enzo Bioarray High Yield RNA Transcript Labeling Kit (Enzo Diagnostics, Farmingdale, NY), purified on a column (Rneasy mini kit, Qiagen), and hybridized to commercially available Affymetrix rat GeneChips arrays according to protocols recommended by the manufacturers. Data was analyzed using the GeneChip Expression Analysis Software (Affymetrix).
Keywords = quantitative real-time RT-PCR
Keywords = insulin receptor substrate 2 (Irs2)
Keywords = phosphatidylinositol 3-kinase
Keywords = regulatory subunit 1
Keywords = (Pik3r1)
Keywords = endurance running
Keywords = treadmill running
 
Submission date Sep 24, 2004
Last update date May 27, 2005
Contact name Justin A. Ways
E-mail(s) jways@mco.edu
Phone 419-383-4150
Organization name Medical College of Ohio
Department Physiology and Cardiovascular Genomics
Street address 3035 Arlington Ave.
City Toledo
State/province OH
ZIP/Postal code 43614
Country USA
 
Platform ID GPL86
Series (1)
GSE1795 Expression Profiling of DA, COP, and F1(COPxDA) rat left ventricles

Data table header descriptions
ID_REF
VALUE normalized signal representing quantity of transcript
ABS_CALL absolute detection call where P=present, A=absent, and M=marginal
DETECTION P-VALUE measure of the significance of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 6.3 A 0.910522
AFFX-MurIL10_at 5.2 A 0.981719
AFFX-MurIL4_at 1 A 0.997133
AFFX-MurFAS_at 8 A 0.794268
AFFX-BioB-5_at 89.7 A 0.239063
AFFX-BioB-M_at 186.6 P 0.004998
AFFX-BioB-3_at 188.5 P 0.026111
AFFX-BioC-5_at 718.7 P 0.000446
AFFX-BioC-3_at 509.9 P 0.001102
AFFX-BioDn-5_at 890.1 P 0.000509
AFFX-BioDn-3_at 4714.9 P 0.00007
AFFX-CreX-5_at 8983.1 P 0.000044
AFFX-CreX-3_at 9705.8 P 0.000044
AFFX-BioB-5_st 42.7 A 0.340661
AFFX-BioB-M_st 33.2 A 0.645547
AFFX-BioB-3_st 16.8 A 0.891021
AFFX-BioC-5_st 11.4 A 0.963431
AFFX-BioC-3_st 5.8 A 0.868639
AFFX-BioDn-5_st 40.7 A 0.287743
AFFX-BioDn-3_st 59.2 A 0.227636

Total number of rows: 8791

Table truncated, full table size 266 Kbytes.




Supplementary data files not provided

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