|
Status |
Public on Apr 01, 2009 |
Title |
Chondrosarcoma_case_3 |
Sample type |
genomic |
|
|
Channel 1 |
Source name |
Case 3
|
Organism |
Homo sapiens |
Characteristics |
Genomic DNA from fresh frozen chondrosarcoma biopsy
|
Biomaterial provider |
Dept of Clinical Genetics, Lund University Hospital, Sweden
|
Extracted molecule |
genomic DNA |
Extraction protocol |
DNeasy Tissue Kit (Qiagen, Valencia, CA, USA)
|
Label |
Cy3
|
Label protocol |
BioPrime array CGH labeling module (Invitrogen, Carlsbad, CA, USA)
|
|
|
Channel 2 |
Source name |
Promega reference male DNA (Promega, Madison, WI, USA)
|
Organism |
Homo sapiens |
Characteristics |
Pooled lymphoblastoid genomic DNA from ten male individuals
|
Biomaterial provider |
Promega, Madison, WI, USA
|
Extracted molecule |
genomic DNA |
Extraction protocol |
none
|
Label |
Cy5
|
Label protocol |
BioPrime array CGH labeling module (Invitrogen, Carlsbad, CA, USA)
|
|
|
|
Hybridization protocol |
Arrays were hybridized and washed as described in Heidenblad et al. (Oncogene 2006;25:7106-16)
|
Scan protocol |
Arrays were scanned in Agilent Microarray scanner
|
Description |
32k BAC array CGH data on chondrosarcoma
|
Data processing |
Primary data were collected using the GenePix Pro 4.0 software, and the quantified data matrix was deposited into the web-based database BioArray Software Environment (BASE), where filtering and lowess normalization were performed.
|
|
|
Submission date |
Aug 13, 2008 |
Last update date |
Feb 25, 2009 |
Contact name |
Karolin H Nord |
Organization name |
Lund University
|
Department |
Dept of Clinical Genetics
|
Street address |
BMC C13
|
City |
Lund |
ZIP/Postal code |
SE-22184 |
Country |
Sweden |
|
|
Platform ID |
GPL4723 |
Series (2) |
GSE12439 |
Genomic profiling of chondrosarcoma: chromosomal patterns in central and peripheral tumors (BAC/CGH) |
GSE12532 |
Genomic profiling of chondrosarcoma: chromosomal patterns in central and peripheral tumors |
|