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Sample GSM313333 Query DataSets for GSM313333
Status Public on Apr 01, 2009
Title Chondrosarcoma_case_28
Sample type RNA
Source name Case 28
Organism Homo sapiens
Characteristics RNA from fresh frozen chondrosarcoma biopsy
Biomaterial provider Dept of Clinical Genetics, Lund University Hospital, Sweden
Extracted molecule total RNA
Extraction protocol Phenol-Chloroform followed by RNeasy mini column (Qiagen, Hilden, Germany)
Label biotin-streptavidin-Cy3
Label protocol TotalPrep RNA Amplification Kit (Ambion Inc., Austin, TX, USA)
Hybridization protocol Arrays were hybridized and washed according to the manufacturer's specifications (Illumina Inc., San Diego, CA, USA)
Scan protocol Arrays were scanned in the Illumina BeadArray Reader
Description Genome-wide gene expression profiling of chondrosarcoma using the Human-6 v2 Expression BeadChip (Illumina Inc., San Diego, CA, USA)
Data processing Image analysis was performed using the Illumina® BeadStudio Application Software. Gene expression data were normalized using Rank Invariant Normalization and analyzed with the Illumina BeadStudio Gene Expression Module (Illumina).
Submission date Aug 18, 2008
Last update date Feb 25, 2009
Contact name Karolin H Nord
Organization name Lund University
Department Dept of Clinical Genetics
Street address BMC C13
City Lund
ZIP/Postal code SE-22184
Country Sweden
Platform ID GPL7180
Series (2)
GSE12475 Genomic profiling of chondrosarcoma: chromosomal patterns in central and peripheral tumors (Illumina)
GSE12532 Genomic profiling of chondrosarcoma: chromosomal patterns in central and peripheral tumors

Data table header descriptions
VALUE normalized intensities

Data table
1 -13.92683
2 1.01251
3 -10.41437
4 -7.718012
5 11.4736
6 32.99425
7 -15.7441
8 128.8155
9 11.70034
10 -20.60841
11 13.07631
12 12.20829
13 -14.11591
14 -4.509352
15 -11.92907
16 -1.005541
17 -11.17311
18 -7.557201
19 -10.0621
20 -0.6645095

Total number of rows: 46713

Table truncated, full table size 688 Kbytes.

Supplementary file Size Download File type/resource
GSM313333_Case_28_1705168043_C_1.txt.gz 10.9 Mb (ftp)(http) TXT
GSM313333_Case_28_1705168043_C_2.txt.gz 11.0 Mb (ftp)(http) TXT
Processed data included within Sample table

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