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Sample GSM313336 Query DataSets for GSM313336
Status Public on Apr 01, 2009
Title Chondrosarcoma_case_37
Sample type RNA
 
Source name Case 37
Organism Homo sapiens
Characteristics RNA from fresh frozen chondrosarcoma biopsy
Biomaterial provider Dept of Clinical Genetics, Lund University Hospital, Sweden
Extracted molecule total RNA
Extraction protocol Phenol-Chloroform followed by RNeasy mini column (Qiagen, Hilden, Germany)
Label biotin-streptavidin-Cy3
Label protocol TotalPrep RNA Amplification Kit (Ambion Inc., Austin, TX, USA)
 
Hybridization protocol Arrays were hybridized and washed according to the manufacturer's specifications (Illumina Inc., San Diego, CA, USA)
Scan protocol Arrays were scanned in the Illumina BeadArray Reader
Description Genome-wide gene expression profiling of chondrosarcoma using the Human-6 v2 Expression BeadChip (Illumina Inc., San Diego, CA, USA)
Data processing Image analysis was performed using the Illumina® BeadStudio Application Software. Gene expression data were normalized using Rank Invariant Normalization and analyzed with the Illumina BeadStudio Gene Expression Module (Illumina).
 
Submission date Aug 18, 2008
Last update date Feb 25, 2009
Contact name Karolin H Nord
Organization name Lund University
Department Dept of Clinical Genetics
Street address BMC C13
City Lund
ZIP/Postal code SE-22184
Country Sweden
 
Platform ID GPL7180
Series (2)
GSE12475 Genomic profiling of chondrosarcoma: chromosomal patterns in central and peripheral tumors (Illumina)
GSE12532 Genomic profiling of chondrosarcoma: chromosomal patterns in central and peripheral tumors

Data table header descriptions
ID_REF
VALUE normalized intensities

Data table
ID_REF VALUE
1 -7.240837
2 -2.955899
3 -7.486219
4 -9.454436
5 11.52096
6 29.37552
7 -11.281
8 113.7366
9 4.436217
10 -10.12197
11 16.19076
12 6.050879
13 -5.504163
14 -0.7767494
15 -5.546264
16 0.9170197
17 -11.23823
18 -2.863834
19 -5.650475
20 -2.173153

Total number of rows: 46713

Table truncated, full table size 686 Kbytes.




Supplementary file Size Download File type/resource
GSM313336_Case_37_1705168045_D_1.txt.gz 11.1 Mb (ftp)(http) TXT
GSM313336_Case_37_1705168045_D_2.txt.gz 11.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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