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Sample GSM313340 Query DataSets for GSM313340
Status Public on Apr 01, 2009
Title Chondrosarcoma_case_62
Sample type RNA
 
Source name Case 62
Organism Homo sapiens
Characteristics RNA from fresh frozen chondrosarcoma biopsy
Biomaterial provider Dept of Clinical Genetics, Lund University Hospital, Sweden
Extracted molecule total RNA
Extraction protocol Phenol-Chloroform followed by RNeasy mini column (Qiagen, Hilden, Germany)
Label biotin-streptavidin-Cy3
Label protocol TotalPrep RNA Amplification Kit (Ambion Inc., Austin, TX, USA)
 
Hybridization protocol Arrays were hybridized and washed according to the manufacturer's specifications (Illumina Inc., San Diego, CA, USA)
Scan protocol Arrays were scanned in the Illumina BeadArray Reader
Description Genome-wide gene expression profiling of chondrosarcoma using the Human-6 v2 Expression BeadChip (Illumina Inc., San Diego, CA, USA)
Data processing Image analysis was performed using the Illumina® BeadStudio Application Software. Gene expression data were normalized using Rank Invariant Normalization and analyzed with the Illumina BeadStudio Gene Expression Module (Illumina).
 
Submission date Aug 18, 2008
Last update date Feb 25, 2009
Contact name Karolin H Nord
Organization name Lund University
Department Dept of Clinical Genetics
Street address BMC C13
City Lund
ZIP/Postal code SE-22184
Country Sweden
 
Platform ID GPL7180
Series (2)
GSE12475 Genomic profiling of chondrosarcoma: chromosomal patterns in central and peripheral tumors (Illumina)
GSE12532 Genomic profiling of chondrosarcoma: chromosomal patterns in central and peripheral tumors

Data table header descriptions
ID_REF
VALUE normalized intensities

Data table
ID_REF VALUE
1 -7.939732
2 1.67946
3 -1.708296
4 -1.203892
5 7.516288
6 27.99042
7 -9.020219
8 95.70488
9 7.038534
10 -5.647156
11 14.26406
12 20.85922
13 -0.5370702
14 0.2459327
15 -2.051132
16 0.4940461
17 -4.114813
18 -1.272058
19 -9.062445
20 3.732067

Total number of rows: 46713

Table truncated, full table size 682 Kbytes.




Supplementary file Size Download File type/resource
GSM313340_Case_62_1828934061_E_1.txt.gz 11.1 Mb (ftp)(http) TXT
GSM313340_Case_62_1828934061_E_2.txt.gz 11.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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