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Sample GSM31764 Query DataSets for GSM31764
Status Public on Nov 01, 2004
Title Fig2 10e7 mir124a rep1
Sample type RNA
 
Source name synthetic
Organism Mus musculus
Extracted molecule total RNA
 
Description Figure 2, A novel method for microarray-based, high-throughput, gene expression profiling of microRNAs. Nature Methods, Nov 2004
Keywords = microRNA
 
Submission date Oct 04, 2004
Last update date May 27, 2005
Contact name Don Baldwin
E-mail(s) dbaldwin@mail.med.upenn.edu
Phone 215-898-3675
Fax 215-898-4227
URL http://www.med.upenn.edu/microarr
Organization name University of Pennsylvania
Department Pathology and Lab Medicine
Lab Penn Microarray Facility
Street address 277 John Morgan, 3620 Hamilton Walk
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL1464
Series (1)
GSE1821 RAKE microRNA

Data table header descriptions
ID_REF
Block subarray (print pin)
Column subarray column
Row subarray row
Name oligo probe name
X scan X coordinate
Y scan Y coordinate
Dia. spot diameter
F532 Median foreground pixels median, detection at wavelength 532nm
F532 Mean foreground pixels mean
F532 SD foreground pixels standard deviation
F532 CV foreground pixels coefficient of variance
B532 background at wavelength 532nm
B532 Median background pixels median
B532 Mean background pixels mean
B532 SD background pixels standard deviation
B532 CV background pixels coefficient of variance
% > B532+1SD percentage foreground pixels greater than background plus one standard deviation
% > B532+2SD percentage foreground pixels greater than background plus two standard deviations
F532 % Sat. percentage foreground pixels at detector saturation
F Pixels number of foreground pixels
B Pixels number of background pixels
Circularity GenePix Pro circularity score
Sum of Medians (1/532) sum of medians
Sum of Means (1/532) sum of means
VALUE background corrected median signal
F532 Mean - B532 background corrected mean signal
F532 Total Intensity total of all foreground pixel fluorescence
SNR 532 signal to noise ratio
Flags GenePix Pro flag values

Data table
ID_REF Block Column Row Name X Y Dia. F532 Median F532 Mean F532 SD F532 CV B532 B532 Median B532 Mean B532 SD B532 CV % > B532+1SD % > B532+2SD F532 % Sat. F Pixels B Pixels Circularity Sum of Medians (1/532) Sum of Means (1/532) VALUE F532 Mean - B532 F532 Total Intensity SNR 532 Flags
100019 1 1 1 ath-miR158 6360 8150 150 4409 4438 683 15 5256 5256 5250 570 10 1 0 0 156 1272 100 -847 -818 -847 -818 692252 -1.425 -50
101285 1 1 2 mmu-mir-23b 6360 8540 150 4206 4376 700 15 5215 5215 5020 670 13 1 0 0 156 1272 100 -1009 -839 -1009 -839 682726 -0.961 -50
101021 1 1 3 mmu-mir-125b 6360 8940 150 4208 4439 702 15 4939 4939 4793 538 11 7 3 0 156 1272 100 -731 -500 -731 -500 692478 -0.658 -50
100751 1 1 4 miR-106a 6360 9340 150 4389 4426 638 14 4950 4950 4903 391 7 7 0 0 156 1272 100 -561 -524 -561 -524 690437 -1.22 -50
100475 1 1 5 hsa-mir-211 6360 9740 150 4318 4412 573 12 4879 4879 4795 532 11 1 0 0 156 1272 100 -561 -467 -561 -467 688227 -0.72 -50
100115 1 1 6 ath-miR319 6360 10140 150 4937 4824 418 8 5162 5162 5179 333 6 2 0 0 156 1272 100 -225 -338 -225 -338 752541 -1.066 -50
101381 1 1 7 rno-miR-325 6360 10540 150 4643 4753 469 9 5260 5260 5249 435 8 2 0 0 156 1272 100 -617 -507 -617 -507 741419 -1.14 -50
101117 1 1 8 mmu-mir-145 6360 10940 150 5054 4869 813 16 5372 5372 5189 694 13 2 0 0 156 1272 100 -318 -503 -318 -503 759525 -0.461 -50
100020 1 2 1 ath-miR158 6750 8140 150 4434 4459 799 17 5190 5190 5140 840 16 1 0 0 156 1272 100 -756 -731 -756 -731 695680 -0.811 -50
101286 1 2 2 mmu-mir-23b 6760 8540 150 4114 4211 677 16 5186 5186 5078 502 9 1 0 0 156 1272 100 -1072 -975 -1072 -975 656912 -1.727 -50
101022 1 2 3 mmu-mir-125b 6760 8940 150 4334 4354 598 13 5184 5184 5080 469 9 0 0 0 156 1272 100 -850 -830 -850 -830 679149 -1.548 -50
100752 1 2 4 miR-106a 6760 9340 150 4170 4191 530 12 5056 5056 4991 431 8 0 0 0 156 1272 100 -886 -865 -886 -865 653721 -1.856 -50
100476 1 2 5 hsa-mir-211 6760 9740 150 3926 4126 568 13 5004 5004 4886 522 10 0 0 0 156 1272 100 -1078 -878 -1078 -878 643717 -1.456 -50
100116 1 2 6 ath-miR319 6760 10140 150 4663 4593 403 8 4915 4915 4831 509 10 1 0 0 156 1272 100 -252 -322 -252 -322 716470 -0.468 -50
101382 1 2 7 rno-miR-325 6760 10540 150 3464 3612 586 16 4864 4864 4748 529 11 0 0 0 156 1272 100 -1400 -1252 -1400 -1252 563432 -2.147 -50
101118 1 2 8 mmu-mir-145 6760 10940 150 4336 4521 757 16 5063 5063 4942 499 10 4 0 0 156 1272 100 -727 -542 -727 -542 705228 -0.844 -50
100403 1 3 1 hsa-mir-197 7150 8140 150 3136 3551 979 27 4765 4765 4445 891 20 0 0 0 156 1272 100 -1629 -1214 -1629 -1214 553987 -1.003 -50
100043 1 3 2 ath-miR161 7160 8540 150 4235 4419 620 14 5140 5140 5026 476 9 0 0 0 156 1272 100 -905 -721 -905 -721 689292 -1.275 -50
101309 1 3 3 mmu-mir-30e 7160 8940 150 4324 4435 704 15 5162 5162 5056 501 9 4 0 0 156 1272 100 -838 -727 -838 -727 691906 -1.24 -50
101045 1 3 4 mmu-mir-132 7160 9340 150 3864 4108 619 15 4991 4991 4745 708 14 0 0 0 156 1272 100 -1127 -883 -1127 -883 640782 -0.9 -50

Total number of rows: 1536

Table truncated, full table size 201 Kbytes.




Supplementary data files not provided
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