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Sample GSM31765 Query DataSets for GSM31765
Status Public on Nov 01, 2004
Title Fig2 10e7 mir124a rep2
Sample type RNA
 
Source name synthetic
Organism Mus musculus
Extracted molecule total RNA
 
Description Figure 2, A novel method for microarray-based, high-throughput, gene expression profiling of microRNAs. Nature Methods, Nov 2004
Keywords = microRNA
 
Submission date Oct 04, 2004
Last update date May 27, 2005
Contact name Don Baldwin
E-mail(s) dbaldwin@mail.med.upenn.edu
Phone 215-898-3675
Fax 215-898-4227
URL http://www.med.upenn.edu/microarr
Organization name University of Pennsylvania
Department Pathology and Lab Medicine
Lab Penn Microarray Facility
Street address 277 John Morgan, 3620 Hamilton Walk
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL1464
Series (1)
GSE1821 RAKE microRNA

Data table header descriptions
ID_REF
Block subarray (print pin)
Column subarray column
Row subarray row
Name oligo probe name
X scan X coordinate
Y scan Y coordinate
Dia. spot diameter
F532 Median foreground pixels median, detection at wavelength 532nm
F532 Mean foreground pixels mean
F532 SD foreground pixels standard deviation
F532 CV foreground pixels coefficient of variance
B532 background at wavelength 532nm
B532 Median background pixels median
B532 Mean background pixels mean
B532 SD background pixels standard deviation
B532 CV background pixels coefficient of variance
% > B532+1SD percentage foreground pixels greater than background plus one standard deviation
% > B532+2SD percentage foreground pixels greater than background plus two standard deviations
F532 % Sat. percentage foreground pixels at detector saturation
F Pixels number of foreground pixels
B Pixels number of background pixels
Circularity GenePix Pro circularity score
Sum of Medians (1/532) sum of medians
Sum of Means (1/532) sum of means
VALUE background corrected median signal
F532 Mean - B532 background corrected mean signal
F532 Total Intensity total of all foreground pixel fluorescence
SNR 532 signal to noise ratio
Flags GenePix Pro flag values

Data table
ID_REF Block Column Row Name X Y Dia. F532 Median F532 Mean F532 SD F532 CV B532 B532 Median B532 Mean B532 SD B532 CV % > B532+1SD % > B532+2SD F532 % Sat. F Pixels B Pixels Circularity Sum of Medians (1/532) Sum of Means (1/532) VALUE F532 Mean - B532 F532 Total Intensity SNR 532 Flags
100019 1 1 1 ath-miR158 6360 8210 150 4433 4710 738 15 5502 5502 5408 624 11 0 0 0 156 1272 100 -1069 -792 -1069 -792 734743 -1.119 -50
101285 1 1 2 mmu-mir-23b 6360 8600 150 4051 4587 1051 22 5754 5754 5575 896 16 0 0 0 156 1272 100 -1703 -1167 -1703 -1167 715635 -1.103 -50
101021 1 1 3 mmu-mir-125b 6360 9000 150 3728 4175 944 22 4843 4843 4867 946 19 3 0 0 156 1272 100 -1115 -668 -1115 -668 651312 -0.732 -50
100751 1 1 4 miR-106a 6360 9400 150 4487 4475 460 10 5009 5009 5011 712 14 0 0 0 156 1272 100 -522 -534 -522 -534 698144 -0.753 -50
100475 1 1 5 hsa-mir-211 6360 9800 150 4129 4260 555 13 4973 4973 4834 571 11 0 0 0 156 1272 100 -844 -713 -844 -713 664555 -1.005 -50
100115 1 1 6 ath-miR319 6360 10200 150 4797 4815 387 8 4981 4981 4999 328 6 8 4 0 156 1272 100 -184 -166 -184 -166 751154 -0.561 -50
101381 1 1 7 rno-miR-325 6360 10600 150 4584 4602 703 15 5031 5031 4948 462 9 5 2 0 156 1272 100 -447 -429 -447 -429 717933 -0.749 -50
101117 1 1 8 mmu-mir-145 6360 11000 150 4648 4598 614 13 4934 4934 4896 622 12 3 1 0 156 1272 100 -286 -336 -286 -336 717237 -0.479 -50
100020 1 2 1 ath-miR158 6750 8200 150 4298 4445 606 13 5020 5020 4917 496 10 1 0 0 156 1272 100 -722 -575 -722 -575 693450 -0.952 -50
101286 1 2 2 mmu-mir-23b 6760 8600 150 4370 4630 1190 25 4955 4955 4864 720 14 10 8 0 156 1272 100 -585 -325 -585 -325 722329 -0.325 -50
101022 1 2 3 mmu-mir-125b 6760 9000 150 3940 4077 425 10 4737 4737 4686 520 11 0 0 0 156 1272 100 -797 -660 -797 -660 636081 -1.171 -50
100752 1 2 4 miR-106a 6760 9400 150 4212 4206 374 8 4664 4664 4655 384 8 0 0 0 156 1272 100 -452 -458 -452 -458 656142 -1.169 -50
100476 1 2 5 hsa-mir-211 6760 9800 150 3903 4054 495 12 4765 4765 4673 458 9 0 0 0 156 1272 100 -862 -711 -862 -711 632407 -1.352 -50
100116 1 2 6 ath-miR319 6760 10200 150 4761 4834 528 10 4869 4869 4881 389 7 14 7 0 156 1272 100 -108 -35 -108 -35 754078 -0.121 -50
101382 1 2 7 rno-miR-325 6760 10600 150 4433 4517 456 10 4991 4991 4954 332 6 4 0 0 156 1272 100 -558 -474 -558 -474 704682 -1.316 -50
101118 1 2 8 mmu-mir-145 6760 11000 150 4637 4528 457 10 4850 4850 4795 389 8 0 0 0 156 1272 100 -213 -322 -213 -322 706383 -0.686 -50
100403 1 3 1 hsa-mir-197 7150 8200 150 2881 3557 1181 33 4810 4810 4483 865 19 0 0 0 156 1272 100 -1929 -1253 -1929 -1253 554892 -1.071 -50
100043 1 3 2 ath-miR161 7160 8600 150 3873 4101 562 13 4682 4682 4608 495 10 2 0 0 156 1272 100 -809 -581 -809 -581 639827 -1.024 -50
101309 1 3 3 mmu-mir-30e 7160 9000 150 4021 4047 494 12 4650 4650 4564 460 10 0 0 0 156 1272 100 -629 -603 -629 -603 631402 -1.124 -50
101045 1 3 4 mmu-mir-132 7160 9400 150 3787 3912 452 11 4649 4649 4567 525 11 0 0 0 156 1272 100 -862 -737 -862 -737 610264 -1.248 -50

Total number of rows: 1536

Table truncated, full table size 202 Kbytes.




Supplementary data files not provided
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