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Sample GSM31768 Query DataSets for GSM31768
Status Public on Nov 01, 2004
Title Fig2 10e9 mir124a rep1
Sample type RNA
 
Source name synthetic
Organism Mus musculus
Extracted molecule total RNA
 
Description Figure 2, A novel method for microarray-based, high-throughput, gene expression profiling of microRNAs. Nature Methods, Nov 2004
Keywords = microRNA
 
Submission date Oct 04, 2004
Last update date May 27, 2005
Contact name Don Baldwin
E-mail(s) dbaldwin@mail.med.upenn.edu
Phone 215-898-3675
Fax 215-898-4227
URL http://www.med.upenn.edu/microarr
Organization name University of Pennsylvania
Department Pathology and Lab Medicine
Lab Penn Microarray Facility
Street address 277 John Morgan, 3620 Hamilton Walk
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL1464
Series (1)
GSE1821 RAKE microRNA

Data table header descriptions
ID_REF
Block subarray (print pin)
Column subarray column
Row subarray row
Name oligo probe name
X scan X coordinate
Y scan Y coordinate
Dia. spot diameter
F532 Median foreground pixels median, detection at wavelength 532nm
F532 Mean foreground pixels mean
F532 SD foreground pixels standard deviation
F532 CV foreground pixels coefficient of variance
B532 background at wavelength 532nm
B532 Median background pixels median
B532 Mean background pixels mean
B532 SD background pixels standard deviation
B532 CV background pixels coefficient of variance
% > B532+1SD percentage foreground pixels greater than background plus one standard deviation
% > B532+2SD percentage foreground pixels greater than background plus two standard deviations
F532 % Sat. percentage foreground pixels at detector saturation
F Pixels number of foreground pixels
B Pixels number of background pixels
Circularity GenePix Pro circularity score
Sum of Medians (1/532) sum of medians
Sum of Means (1/532) sum of means
VALUE background corrected median signal
F532 Mean - B532 background corrected mean signal
F532 Total Intensity total of all foreground pixel fluorescence
SNR 532 signal to noise ratio
Flags GenePix Pro flag values

Data table
ID_REF Block Column Row Name X Y Dia. F532 Median F532 Mean F532 SD F532 CV B532 B532 Median B532 Mean B532 SD B532 CV % > B532+1SD % > B532+2SD F532 % Sat. F Pixels B Pixels Circularity Sum of Medians (1/532) Sum of Means (1/532) VALUE F532 Mean - B532 F532 Total Intensity SNR 532 Flags
100019 1 1 1 ath-miR158 6300 8350 150 4907 4929 526 10 5401 5401 5346 440 8 4 0 0 156 1272 100 -494 -472 -494 -472 768987 -0.948 -50
101285 1 1 2 mmu-mir-23b 6300 8740 150 3939 4034 461 11 4717 4717 4657 763 16 0 0 0 156 1272 100 -778 -683 -778 -683 629292 -0.817 -50
101021 1 1 3 mmu-mir-125b 6300 9140 150 4094 4144 526 12 4789 4789 5171 2358 45 0 0 0 156 1272 100 -695 -645 -695 -645 646404 -0.436 -50
100751 1 1 4 miR-106a 6300 9540 150 4703 4703 756 16 5357 5357 6124 2555 41 0 0 0 156 1272 100 -654 -654 -654 -654 733713 -0.556 -50
100475 1 1 5 hsa-mir-211 6300 9940 150 4630 4659 515 11 5267 5267 5701 2110 37 0 0 0 156 1272 100 -637 -608 -637 -608 726881 -0.494 -50
100115 1 1 6 ath-miR319 6300 10340 150 5283 5408 631 11 5275 5275 5347 488 9 22 9 0 156 1272 100 8 133 8 133 843584 0.125 -50
101381 1 1 7 rno-miR-325 6300 10740 150 4587 4630 447 9 5144 5144 5059 438 8 0 0 0 156 1272 100 -557 -514 -557 -514 722352 -0.979 -50
101117 1 1 8 mmu-mir-145 6300 11140 150 5024 5001 361 7 4940 4940 4909 356 7 16 1 0 156 1272 100 84 61 84 61 780172 0.258 -50
100020 1 2 1 ath-miR158 6690 8340 150 4938 4937 537 10 5455 5455 5385 497 9 1 0 0 156 1272 100 -517 -518 -517 -518 770122 -0.901 -50
101286 1 2 2 mmu-mir-23b 6700 8740 150 4572 4621 470 10 5349 5349 5288 538 10 0 0 0 156 1272 100 -777 -728 -777 -728 720861 -1.24 -50
101022 1 2 3 mmu-mir-125b 6700 9140 150 4614 4684 445 9 5266 5266 5223 421 8 1 0 0 156 1272 100 -652 -582 -652 -582 730699 -1.28 -50
100752 1 2 4 miR-106a 6700 9540 150 4702 4667 419 8 5176 5176 5153 394 7 0 0 0 156 1272 100 -474 -509 -474 -509 727981 -1.234 -50
100476 1 2 5 hsa-mir-211 6700 9940 150 4224 4355 519 11 5061 5061 4927 572 11 0 0 0 156 1272 100 -837 -706 -837 -706 679444 -1 -50
100116 1 2 6 ath-miR319 6700 10340 150 5196 5394 700 12 5110 5110 5171 529 10 30 17 0 156 1272 100 86 284 86 284 841433 0.422 -50
101382 1 2 7 rno-miR-325 6700 10740 150 4346 4453 481 10 5051 5051 4999 487 9 1 0 0 156 1272 100 -705 -598 -705 -598 694713 -1.121 -50
101118 1 2 8 mmu-mir-145 6700 11140 150 4747 5078 1533 30 4930 4930 4959 629 12 15 12 0 156 1272 100 -183 148 -183 148 792201 0.189 -50
100403 1 3 1 hsa-mir-197 7090 8340 150 3819 4214 1152 27 5528 5528 5168 931 18 0 0 0 156 1272 100 -1709 -1314 -1709 -1314 657357 -1.025 -50
100043 1 3 2 ath-miR161 7100 8740 150 4626 4694 531 11 5399 5399 5273 521 9 0 0 0 156 1272 100 -773 -705 -773 -705 732256 -1.111 -50
101309 1 3 3 mmu-mir-30e 7100 9140 150 4617 4670 527 11 5284 5284 5167 534 10 0 0 0 156 1272 100 -667 -614 -667 -614 728537 -0.931 -50
101045 1 3 4 mmu-mir-132 7100 9540 150 4432 4497 433 9 5193 5193 5130 583 11 0 0 0 156 1272 100 -761 -696 -761 -696 701499 -1.086 -50

Total number of rows: 1536

Table truncated, full table size 201 Kbytes.




Supplementary data files not provided
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