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Sample GSM31769 Query DataSets for GSM31769
Status Public on Nov 01, 2004
Title Fig2 10e9 mir124a rep2
Sample type RNA
 
Source name synthetic
Organism Mus musculus
Extracted molecule total RNA
 
Description Figure 2, A novel method for microarray-based, high-throughput, gene expression profiling of microRNAs. Nature Methods, Nov 2004
Keywords = microRNA
 
Submission date Oct 04, 2004
Last update date May 27, 2005
Contact name Don Baldwin
E-mail(s) dbaldwin@mail.med.upenn.edu
Phone 215-898-3675
Fax 215-898-4227
URL http://www.med.upenn.edu/microarr
Organization name University of Pennsylvania
Department Pathology and Lab Medicine
Lab Penn Microarray Facility
Street address 277 John Morgan, 3620 Hamilton Walk
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL1464
Series (1)
GSE1821 RAKE microRNA

Data table header descriptions
ID_REF
Block subarray (print pin)
Column subarray column
Row subarray row
Name oligo probe name
X scan X coordinate
Y scan Y coordinate
Dia. spot diameter
F532 Median foreground pixels median, detection at wavelength 532nm
F532 Mean foreground pixels mean
F532 SD foreground pixels standard deviation
F532 CV foreground pixels coefficient of variance
B532 background at wavelength 532nm
B532 Median background pixels median
B532 Mean background pixels mean
B532 SD background pixels standard deviation
B532 CV background pixels coefficient of variance
% > B532+1SD percentage foreground pixels greater than background plus one standard deviation
% > B532+2SD percentage foreground pixels greater than background plus two standard deviations
F532 % Sat. percentage foreground pixels at detector saturation
F Pixels number of foreground pixels
B Pixels number of background pixels
Circularity GenePix Pro circularity score
Sum of Medians (1/532) sum of medians
Sum of Means (1/532) sum of means
VALUE background corrected median signal
F532 Mean - B532 background corrected mean signal
F532 Total Intensity total of all foreground pixel fluorescence
SNR 532 signal to noise ratio
Flags GenePix Pro flag values

Data table
ID_REF Block Column Row Name X Y Dia. F532 Median F532 Mean F532 SD F532 CV B532 B532 Median B532 Mean B532 SD B532 CV % > B532+1SD % > B532+2SD F532 % Sat. F Pixels B Pixels Circularity Sum of Medians (1/532) Sum of Means (1/532) VALUE F532 Mean - B532 F532 Total Intensity SNR 532 Flags
100019 1 1 1 ath-miR158 6300 8460 150 7548 7447 581 7 7760 7760 7635 702 9 1 0 0 156 1272 100 -212 -313 -212 -313 1161713 -0.268 -50
101285 1 1 2 mmu-mir-23b 6300 8850 150 7148 7193 619 8 7387 7387 7257 684 9 5 2 0 156 1272 100 -239 -194 -239 -194 1122169 -0.094 -50
101021 1 1 3 mmu-mir-125b 6300 9250 150 6925 6946 313 4 7028 7028 6961 518 7 2 0 0 156 1272 100 -103 -82 -103 -82 1083539 -0.029 -50
100751 1 1 4 miR-106a 6300 9650 150 6578 6547 380 5 6761 6761 6670 574 8 1 0 0 156 1272 100 -183 -214 -183 -214 1021384 -0.214 -50
100475 1 1 5 hsa-mir-211 6300 10050 150 6476 6382 524 8 6742 6742 6587 688 10 0 0 0 156 1272 100 -266 -360 -266 -360 995665 -0.298 -50
100115 1 1 6 ath-miR319 6400 10510 160 9329 9387 731 7 6440 6440 6494 455 7 100 100 0 107 1484 42 2889 2947 2889 2947 1004451 6.358 0
101381 1 1 7 rno-miR-325 6300 10850 150 6322 6316 622 9 6338 6338 6218 551 8 8 4 0 156 1272 100 -16 -22 -16 -22 985269 0.178 -50
101117 1 1 8 mmu-mir-145 6300 11250 150 6419 6451 432 6 6511 6511 6513 361 5 7 1 0 156 1272 100 -92 -60 -92 -60 1006347 -0.172 -50
100020 1 2 1 ath-miR158 6690 8450 150 7409 7323 517 7 7463 7463 7418 880 11 0 0 0 156 1272 100 -54 -140 -54 -140 1142409 -0.108 -50
101286 1 2 2 mmu-mir-23b 6700 8850 150 7048 6982 425 6 7133 7133 6986 720 10 0 0 0 156 1272 100 -85 -151 -85 -151 1089175 -0.006 -50
101022 1 2 3 mmu-mir-125b 6700 9250 150 6709 6714 494 7 6750 6750 6754 940 13 1 1 0 156 1272 100 -41 -36 -41 -36 1047330 -0.043 -50
100752 1 2 4 miR-106a 6700 9650 150 6632 6668 556 8 6566 6566 6509 526 8 11 0 0 156 1272 100 66 102 66 102 1040196 0.302 -50
100476 1 2 5 hsa-mir-211 6700 10050 150 6419 6440 610 9 6413 6413 6282 739 11 4 1 0 156 1272 100 6 27 6 27 1004624 0.214 -50
100116 1 2 6 ath-miR319 6800 10500 160 9323 9351 703 7 6314 6314 6399 569 8 100 100 0 109 1482 5 3009 3037 3009 3037 1019223 5.188 0
101382 1 2 7 rno-miR-325 6700 10850 150 6047 6065 496 8 6202 6202 6191 970 15 3 1 0 156 1272 100 -155 -137 -155 -137 946127 -0.13 -50
101118 1 2 8 mmu-mir-145 6700 11250 150 6623 6592 273 4 6593 6593 6604 291 4 14 1 0 156 1272 100 30 -1 30 -1 1028310 -0.041 -50
100403 1 3 1 hsa-mir-197 7090 8450 150 7631 7368 965 13 7432 7432 7030 1328 18 0 0 0 156 1272 100 199 -64 199 -64 1149337 0.255 -50
100043 1 3 2 ath-miR161 7100 8850 150 7291 7154 631 8 7173 7173 7002 984 14 1 0 0 156 1272 100 118 -19 118 -19 1116026 0.154 -50
101309 1 3 3 mmu-mir-30e 7100 9250 150 6554 6515 429 6 6606 6606 6510 696 10 1 0 0 156 1272 100 -52 -91 -52 -91 1016326 0.007 -50
101045 1 3 4 mmu-mir-132 7100 9650 150 6350 6319 395 6 6398 6398 6308 601 9 0 0 0 156 1272 100 -48 -79 -48 -79 985772 0.018 -50

Total number of rows: 1536

Table truncated, full table size 199 Kbytes.




Supplementary data files not provided
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