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Sample GSM31770 Query DataSets for GSM31770
Status Public on Nov 01, 2004
Title Fig2 10e10 mir124a rep1
Sample type RNA
 
Source name synthetic
Organism Mus musculus
Extracted molecule total RNA
 
Description Figure 2, A novel method for microarray-based, high-throughput, gene expression profiling of microRNAs. Nature Methods, Nov 2004
Keywords = microRNA
 
Submission date Oct 04, 2004
Last update date May 27, 2005
Contact name Don Baldwin
E-mail(s) dbaldwin@mail.med.upenn.edu
Phone 215-898-3675
Fax 215-898-4227
URL http://www.med.upenn.edu/microarr
Organization name University of Pennsylvania
Department Pathology and Lab Medicine
Lab Penn Microarray Facility
Street address 277 John Morgan, 3620 Hamilton Walk
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL1464
Series (1)
GSE1821 RAKE microRNA

Data table header descriptions
ID_REF
Block subarray (print pin)
Column subarray column
Row subarray row
Name oligo probe name
X scan X coordinate
Y scan Y coordinate
Dia. spot diameter
F532 Median foreground pixels median, detection at wavelength 532nm
F532 Mean foreground pixels mean
F532 SD foreground pixels standard deviation
F532 CV foreground pixels coefficient of variance
B532 background at wavelength 532nm
B532 Median background pixels median
B532 Mean background pixels mean
B532 SD background pixels standard deviation
B532 CV background pixels coefficient of variance
% > B532+1SD percentage foreground pixels greater than background plus one standard deviation
% > B532+2SD percentage foreground pixels greater than background plus two standard deviations
F532 % Sat. percentage foreground pixels at detector saturation
F Pixels number of foreground pixels
B Pixels number of background pixels
Circularity GenePix Pro circularity score
Sum of Medians (1/532) sum of medians
Sum of Means (1/532) sum of means
VALUE background corrected median signal
F532 Mean - B532 background corrected mean signal
F532 Total Intensity total of all foreground pixel fluorescence
SNR 532 signal to noise ratio
Flags GenePix Pro flag values

Data table
ID_REF Block Column Row Name X Y Dia. F532 Median F532 Mean F532 SD F532 CV B532 B532 Median B532 Mean B532 SD B532 CV % > B532+1SD % > B532+2SD F532 % Sat. F Pixels B Pixels Circularity Sum of Medians (1/532) Sum of Means (1/532) VALUE F532 Mean - B532 F532 Total Intensity SNR 532 Flags
100019 1 1 1 ath-miR158 6370 8450 150 5200 5085 512 10 5957 5957 5919 358 6 0 0 0 156 1272 100 -757 -872 -757 -872 793232 -2.33 -50
101285 1 1 2 mmu-mir-23b 6370 8840 150 4932 4922 419 8 5810 5810 5749 463 8 0 0 0 156 1272 100 -878 -888 -878 -888 767871 -1.786 -50
101021 1 1 3 mmu-mir-125b 6370 9240 150 5037 4995 323 6 5706 5706 5691 463 8 0 0 0 156 1272 100 -669 -711 -669 -711 779219 -1.503 -50
100751 1 1 4 miR-106a 6370 9640 150 5010 4950 345 6 5543 5543 5548 353 6 0 0 0 156 1272 100 -533 -593 -533 -593 772225 -1.694 -50
100475 1 1 5 hsa-mir-211 6370 10040 150 4434 4468 311 6 5388 5388 5319 441 8 0 0 0 156 1272 100 -954 -920 -954 -920 696961 -1.93 -50
100115 1 1 6 ath-miR319 6310 10470 160 8582 8683 1175 13 5474 5474 5501 320 5 100 100 0 167 1429 17 3108 3209 3108 3209 1450001 9.944 0
101381 1 1 7 rno-miR-325 6370 10840 150 4573 4671 509 10 5351 5351 5313 421 7 1 0 0 156 1272 100 -778 -680 -778 -680 728668 -1.525 -50
101117 1 1 8 mmu-mir-145 6370 11240 150 5218 5208 253 4 5299 5299 5322 317 5 5 0 0 156 1272 100 -81 -91 -81 -91 812477 -0.36 -50
100020 1 2 1 ath-miR158 6760 8440 150 5403 5307 572 10 5982 5982 5992 424 7 1 0 0 156 1272 100 -579 -675 -579 -675 827884 -1.616 -50
101286 1 2 2 mmu-mir-23b 6770 8840 150 5004 5000 342 6 5805 5805 5780 482 8 0 0 0 156 1272 100 -801 -805 -801 -805 779944 -1.618 -50
101022 1 2 3 mmu-mir-125b 6770 9240 150 5067 5070 432 8 5682 5682 5656 395 6 1 1 0 156 1272 100 -615 -612 -615 -612 790992 -1.484 -50
100752 1 2 4 miR-106a 6770 9640 150 4992 4964 406 8 5507 5507 5503 367 6 0 0 0 156 1272 100 -515 -543 -515 -543 774383 -1.469 -50
100476 1 2 5 hsa-mir-211 6770 10040 150 4401 4418 266 6 5419 5419 5392 517 9 0 0 0 156 1272 100 -1018 -1001 -1018 -1001 689215 -1.884 -50
100116 1 2 6 ath-miR319 6780 10450 170 8615 8777 1143 13 5503 5503 5546 440 7 100 100 0 187 1524 56 3112 3274 3112 3274 1641277 7.343 0
101382 1 2 7 rno-miR-325 6770 10840 150 4606 4676 370 7 5496 5496 5464 349 6 0 0 0 156 1272 100 -890 -820 -890 -820 729506 -2.258 -50
101118 1 2 8 mmu-mir-145 6770 11240 150 5397 5359 359 6 5377 5377 5391 280 5 12 2 0 156 1272 100 20 -18 20 -18 835968 -0.114 -50
100403 1 3 1 hsa-mir-197 7160 8440 150 3894 3992 737 18 6234 6234 6058 747 12 0 0 0 156 1272 100 -2340 -2242 -2340 -2242 622818 -2.766 -50
100043 1 3 2 ath-miR161 7170 8840 150 5267 5300 445 8 6081 6081 6042 484 8 1 0 0 156 1272 100 -814 -781 -814 -781 826732 -1.533 -50
101309 1 3 3 mmu-mir-30e 7170 9240 150 5008 4991 494 9 5981 5981 5958 426 7 0 0 0 156 1272 100 -973 -990 -973 -990 778672 -2.27 -50
101045 1 3 4 mmu-mir-132 7170 9640 150 4602 4606 391 8 5807 5807 5869 966 16 0 0 0 156 1272 100 -1205 -1201 -1205 -1201 718581 -1.307 -50

Total number of rows: 1536

Table truncated, full table size 200 Kbytes.




Supplementary data files not provided
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