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Sample GSM31771 Query DataSets for GSM31771
Status Public on Nov 01, 2004
Title Fig2 10e10 mir124a rep2
Sample type RNA
 
Source name synthetic
Organism Mus musculus
Extracted molecule total RNA
 
Description Figure 2, A novel method for microarray-based, high-throughput, gene expression profiling of microRNAs. Nature Methods, Nov 2004
Keywords = microRNA
 
Submission date Oct 04, 2004
Last update date May 27, 2005
Contact name Don Baldwin
E-mail(s) dbaldwin@mail.med.upenn.edu
Phone 215-898-3675
Fax 215-898-4227
URL http://www.med.upenn.edu/microarr
Organization name University of Pennsylvania
Department Pathology and Lab Medicine
Lab Penn Microarray Facility
Street address 277 John Morgan, 3620 Hamilton Walk
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL1464
Series (1)
GSE1821 RAKE microRNA

Data table header descriptions
ID_REF
Block subarray (print pin)
Column subarray column
Row subarray row
Name oligo probe name
X scan X coordinate
Y scan Y coordinate
Dia. spot diameter
F532 Median foreground pixels median, detection at wavelength 532nm
F532 Mean foreground pixels mean
F532 SD foreground pixels standard deviation
F532 CV foreground pixels coefficient of variance
B532 background at wavelength 532nm
B532 Median background pixels median
B532 Mean background pixels mean
B532 SD background pixels standard deviation
B532 CV background pixels coefficient of variance
% > B532+1SD percentage foreground pixels greater than background plus one standard deviation
% > B532+2SD percentage foreground pixels greater than background plus two standard deviations
F532 % Sat. percentage foreground pixels at detector saturation
F Pixels number of foreground pixels
B Pixels number of background pixels
Circularity GenePix Pro circularity score
Sum of Medians (1/532) sum of medians
Sum of Means (1/532) sum of means
VALUE background corrected median signal
F532 Mean - B532 background corrected mean signal
F532 Total Intensity total of all foreground pixel fluorescence
SNR 532 signal to noise ratio
Flags GenePix Pro flag values

Data table
ID_REF Block Column Row Name X Y Dia. F532 Median F532 Mean F532 SD F532 CV B532 B532 Median B532 Mean B532 SD B532 CV % > B532+1SD % > B532+2SD F532 % Sat. F Pixels B Pixels Circularity Sum of Medians (1/532) Sum of Means (1/532) VALUE F532 Mean - B532 F532 Total Intensity SNR 532 Flags
100019 1 1 1 ath-miR158 6350 8220 150 4595 4600 412 8 4856 4856 4868 1171 24 0 0 0 156 1272 100 -261 -256 -261 -256 717644 -0.229 -50
101285 1 1 2 mmu-mir-23b 6350 8610 150 4594 4476 495 11 4725 4725 4655 411 8 3 0 0 156 1272 100 -131 -249 -131 -249 698311 -0.436 -50
101021 1 1 3 mmu-mir-125b 6350 9010 150 4552 4551 357 7 4714 4714 4691 398 8 4 0 0 156 1272 100 -162 -163 -162 -163 709961 -0.352 -50
100751 1 1 4 miR-106a 6350 9410 150 4427 4530 702 15 4631 4631 4629 364 7 8 4 0 156 1272 100 -204 -101 -204 -101 706607 -0.272 -50
100475 1 1 5 hsa-mir-211 6350 9810 150 4296 4224 405 9 4542 4542 4480 544 12 1 0 0 156 1272 100 -246 -318 -246 -318 658984 -0.471 -50
100115 1 1 6 ath-miR319 6300 10310 150 6959 7012 521 7 4720 4720 4736 303 6 100 100 0 71 1245 12 2239 2292 2239 2292 497842 7.512 0
101381 1 1 7 rno-miR-325 6350 10610 150 4619 4529 452 9 4651 4651 4576 419 9 5 0 0 156 1267 100 -32 -122 -32 -122 706511 -0.112 -50
101117 1 1 8 mmu-mir-145 6350 11010 150 4704 4754 366 7 4684 4684 4691 262 5 17 5 0 156 1272 100 20 70 20 70 741645 0.24 -50
100020 1 2 1 ath-miR158 6740 8210 150 4656 4633 403 8 4843 4843 4827 397 8 5 0 0 156 1272 100 -187 -210 -187 -210 722672 -0.489 -50
101286 1 2 2 mmu-mir-23b 6750 8610 150 4517 4477 516 11 4730 4730 4679 404 8 5 1 0 156 1272 100 -213 -253 -213 -253 698432 -0.5 -50
101022 1 2 3 mmu-mir-125b 6750 9010 150 4582 4597 383 8 4826 4826 4808 383 7 7 0 0 156 1272 100 -244 -229 -244 -229 717099 -0.551 -50
100752 1 2 4 miR-106a 6750 9410 150 4505 4512 474 10 4669 4669 4685 744 15 0 0 0 156 1272 100 -164 -157 -164 -157 703906 -0.233 -50
100476 1 2 5 hsa-mir-211 6750 9810 150 4288 4277 512 11 4589 4589 4537 418 9 5 1 0 156 1272 100 -301 -312 -301 -312 667181 -0.622 -50
100116 1 2 6 ath-miR319 6680 10260 80 7082 7118 454 6 4846 4846 4996 635 12 100 100 0 24 345 2 2236 2272 2236 2272 170836 3.342 0
101382 1 2 7 rno-miR-325 6750 10610 150 4581 4517 455 10 4687 4687 4610 426 9 5 1 0 156 1272 100 -106 -170 -106 -170 704614 -0.218 -50
101118 1 2 8 mmu-mir-145 6750 11010 150 4643 4645 226 4 4766 4766 4811 649 13 0 0 0 156 1272 100 -123 -121 -123 -121 724606 -0.256 -50
100403 1 3 1 hsa-mir-197 7140 8210 150 4643 4346 720 16 4826 4826 4582 763 16 0 0 0 156 1272 100 -183 -480 -183 -480 677921 -0.309 -50
100043 1 3 2 ath-miR161 7150 8610 150 4409 4400 425 9 4747 4747 4713 570 12 2 0 0 156 1272 100 -338 -347 -338 -347 686426 -0.549 -50
101309 1 3 3 mmu-mir-30e 7150 9010 150 4454 4425 435 9 4726 4726 4681 440 9 2 0 0 156 1272 100 -272 -301 -272 -301 690273 -0.582 -50
101045 1 3 4 mmu-mir-132 7150 9410 150 4486 4425 476 10 4703 4703 4618 410 8 5 0 0 156 1272 100 -217 -278 -217 -278 690313 -0.471 -50

Total number of rows: 1536

Table truncated, full table size 198 Kbytes.




Supplementary data files not provided

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